Chaste Release::3.1
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#include <IncompressibleNonlinearElasticitySolver.hpp>
Public Member Functions | |
IncompressibleNonlinearElasticitySolver (QuadraticMesh< DIM > &rQuadMesh, SolidMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory) | |
~IncompressibleNonlinearElasticitySolver () | |
Protected Member Functions | |
virtual void | AssembleOnElement (Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian) |
void | FormInitialGuess () |
void | AssembleSystem (bool assembleResidual, bool assembleJacobian) |
Static Protected Attributes | |
static const size_t | NUM_NODES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_ELEMENT |
static const size_t | NUM_VERTICES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_VERTICES_PER_ELEMENT |
static const size_t | NUM_NODES_PER_BOUNDARY_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_BOUNDARY_ELEMENT |
static const size_t | STENCIL_SIZE = DIM*NUM_NODES_PER_ELEMENT + NUM_VERTICES_PER_ELEMENT |
static const size_t | BOUNDARY_STENCIL_SIZE = DIM*NUM_NODES_PER_BOUNDARY_ELEMENT |
Friends | |
class | TestIncompressibleNonlinearElasticitySolver |
class | TestCompressibleNonlinearElasticitySolver |
class | TestNonlinearElasticityAdjointSolver |
class | AdaptiveNonlinearElasticityProblem |
Finite elasticity solver. Solves static *incompressible* nonlinear elasticity problems with arbitrary (incompressible) material laws and a body force.
Uses quadratic-linear bases (for displacement and pressure), and is therefore outside other assembler or solver hierarchy.
Definition at line 60 of file IncompressibleNonlinearElasticitySolver.hpp.
IncompressibleNonlinearElasticitySolver< DIM >::IncompressibleNonlinearElasticitySolver | ( | QuadraticMesh< DIM > & | rQuadMesh, |
SolidMechanicsProblemDefinition< DIM > & | rProblemDefinition, | ||
std::string | outputDirectory | ||
) |
Constructor.
rQuadMesh | The quadratic mesh to solve on |
rProblemDefinition | an object defining in particular the body force and boundary conditions |
outputDirectory | The output directory |
Definition at line 606 of file IncompressibleNonlinearElasticitySolver.cpp.
References EXCEPTION, IncompressibleNonlinearElasticitySolver< DIM >::FormInitialGuess(), and SolidMechanicsProblemDefinition< DIM >::GetCompressibilityType().
IncompressibleNonlinearElasticitySolver< DIM >::~IncompressibleNonlinearElasticitySolver | ( | ) | [inline] |
Destructor.
Definition at line 155 of file IncompressibleNonlinearElasticitySolver.hpp.
void IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement | ( | Element< DIM, DIM > & | rElement, |
c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > & | rAElem, | ||
c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > & | rAElemPrecond, | ||
c_vector< double, STENCIL_SIZE > & | rBElem, | ||
bool | assembleResidual, | ||
bool | assembleJacobian | ||
) | [protected, virtual] |
Assemble residual or Jacobian on an element, using the current solution stored in mCurrrentSolution. The ordering assumed is (in 2d) rBElem = [u0 v0 u1 v1 .. u5 v5 p0 p1 p2]. (This ordering in used at the element level, but not in the global matrix/vector).
rElement | The element to assemble on. |
rAElem | The element's contribution to the LHS matrix is returned in this n by n matrix, where n is the no. of nodes in this element. There is no need to zero this matrix before calling. |
rAElemPrecond | The element's contribution to the matrix passed to PetSC in creating a preconditioner |
rBElem | The element's contribution to the RHS vector is returned in this vector of length n, the no. of nodes in this element. There is no need to zero this vector before calling. |
assembleResidual | A bool stating whether to assemble the residual vector. |
assembleJacobian | A bool stating whether to assemble the Jacobian matrix. |
Definition at line 210 of file IncompressibleNonlinearElasticitySolver.cpp.
References QuadraticBasisFunction< ELEMENT_DIM >::ComputeBasisFunctions(), LinearBasisFunction< ELEMENT_DIM >::ComputeBasisFunctions(), AbstractMaterialLaw< DIM >::ComputeStressAndStressDerivative(), QuadraticBasisFunction< ELEMENT_DIM >::ComputeTransformedBasisFunctionDerivatives(), Determinant(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), Inverse(), NEVER_REACHED, and AbstractMaterialLaw< DIM >::SetChangeOfBasisMatrix().
void IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem | ( | bool | assembleResidual, |
bool | assembleJacobian | ||
) | [protected, virtual] |
Assemble the residual vector (using the current solution stored in mCurrentSolution, output going to mpLinearSystem->rGetRhsVector), or Jacobian matrix (using the current solution stored in mCurrentSolution, output going to mpLinearSystem->rGetLhsMatrix).
assembleResidual | A bool stating whether to assemble the residual vector. |
assembleJacobian | A bool stating whether to assemble the Jacobian matrix. |
Implements AbstractNonlinearElasticitySolver< DIM >.
Definition at line 52 of file IncompressibleNonlinearElasticitySolver.cpp.
References PetscVecTools::Finalise(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), PetscTools::GetMyRank(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), CommandLineArguments::Instance(), CommandLineArguments::OptionExists(), PetscMatTools::SwitchWriteMode(), PetscMatTools::Zero(), and PetscVecTools::Zero().
void IncompressibleNonlinearElasticitySolver< DIM >::FormInitialGuess | ( | ) | [protected] |
Set up the current guess to be the solution given no displacement.
The initial guess is zero for spatial variables, 0 for dummy pressure variables, and the appropriate choice of pressure such that the initial stress is zero (depends on material law)
In a homogeneous problem, all (the non-dummy) pressures are the same. In a heterogeneous problem, p for a given vertex is the zero-strain-pressure for ONE of the elements containing that vertex (which element containing the vertex is reached LAST). In this case the initial guess will be close but not exactly the solution given zero body force.
Definition at line 580 of file IncompressibleNonlinearElasticitySolver.cpp.
Referenced by IncompressibleNonlinearElasticitySolver< DIM >::IncompressibleNonlinearElasticitySolver().
const size_t IncompressibleNonlinearElasticitySolver< DIM >::BOUNDARY_STENCIL_SIZE = DIM*NUM_NODES_PER_BOUNDARY_ELEMENT [static, protected] |
Boundary stencil size.
Reimplemented from AbstractNonlinearElasticitySolver< DIM >.
Definition at line 85 of file IncompressibleNonlinearElasticitySolver.hpp.
const size_t IncompressibleNonlinearElasticitySolver< DIM >::NUM_NODES_PER_BOUNDARY_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_BOUNDARY_ELEMENT [static, protected] |
Number of nodes per boundary element.
Reimplemented from AbstractNonlinearElasticitySolver< DIM >.
Definition at line 76 of file IncompressibleNonlinearElasticitySolver.hpp.
const size_t IncompressibleNonlinearElasticitySolver< DIM >::NUM_NODES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_NODES_PER_ELEMENT [static, protected] |
Number of nodes per element.
Reimplemented from AbstractNonlinearElasticitySolver< DIM >.
Definition at line 70 of file IncompressibleNonlinearElasticitySolver.hpp.
const size_t IncompressibleNonlinearElasticitySolver< DIM >::NUM_VERTICES_PER_ELEMENT = AbstractNonlinearElasticitySolver<DIM>::NUM_VERTICES_PER_ELEMENT [static, protected] |
Number of vertices per element.
Reimplemented from AbstractNonlinearElasticitySolver< DIM >.
Definition at line 73 of file IncompressibleNonlinearElasticitySolver.hpp.
const size_t IncompressibleNonlinearElasticitySolver< DIM >::STENCIL_SIZE = DIM*NUM_NODES_PER_ELEMENT + NUM_VERTICES_PER_ELEMENT [static, protected] |
Stencil size - number of unknowns per element (DIM*NUM_NODES_PER_ELEMENT displacement unknowns, NUM_VERTICES_PER_ELEMENT pressure unknowns.
Definition at line 82 of file IncompressibleNonlinearElasticitySolver.hpp.