AbstractOnLatticeCellPopulation.hpp

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*/
 
#ifndef ABSTRACTONLATTICECELLPOPULATION_HPP_
#define ABSTRACTONLATTICECELLPOPULATION_HPP_
 
#include "AbstractCellPopulation.hpp"
#include "AbstractUpdateRule.hpp"
 
template<unsigned DIM>
class AbstractOnLatticeCellPopulation : public AbstractCellPopulation<DIM>
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellPopulation<DIM> >(*this);
        archive & mUpdateRuleCollection;
        archive & mUpdateNodesInRandomOrder;
        archive & mIterateRandomlyOverUpdateRuleCollection;
    }
 
protected:
 
    std::vector<boost::shared_ptr<AbstractUpdateRule<DIM> > > mUpdateRuleCollection;
 
    bool mDeleteMesh;
 
    bool mUpdateNodesInRandomOrder;
 
    bool mIterateRandomlyOverUpdateRuleCollection;
 
    AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh);
 
public:
 
    AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh,
                                    std::vector<CellPtr>& rCells,
                                    const std::vector<unsigned> locationIndices=std::vector<unsigned>(),
                                    bool deleteMesh=false);
 
    virtual ~AbstractOnLatticeCellPopulation();
 
    virtual void UpdateCellLocations(double dt)=0;
 
    bool GetUpdateNodesInRandomOrder();
 
    void SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder);
 
    void SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly);
 
    bool GetIterateRandomlyOverUpdateRuleCollection();
 
    void SetNode(unsigned index, ChastePoint<DIM>& rNewLocation);
 
    std::set<unsigned> GetNeighbouringNodeIndices(unsigned index);
 
    virtual void OutputCellPopulationParameters(out_stream& rParamsFile);
 
    virtual double GetDefaultTimeStep();
 
    virtual void AddUpdateRule(boost::shared_ptr<AbstractUpdateRule<DIM> > pUpdateRule)=0;
 
    virtual void RemoveAllUpdateRules();
 
    virtual const std::vector<boost::shared_ptr<AbstractUpdateRule<DIM> > > GetUpdateRuleCollection() const;
};
 
#endif /*ABSTRACTONLATTICECELLPOPULATION_HPP_*/