Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CryptSimulation2d.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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13modification, are permitted provided that the following conditions are met:
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15 this list of conditions and the following disclaimer.
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19 * Neither the name of the University of Oxford nor the names of its
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34*/
35
36#ifndef CRYPTSIMULATION2D_HPP_
37#define CRYPTSIMULATION2D_HPP_
38
40#include <boost/serialization/base_object.hpp>
41
42#include "WntConcentration.hpp"
43#include "OffLatticeSimulation.hpp"
44#include "VertexBasedCellPopulation.hpp"
45#include "CryptSimulationBoundaryCondition.hpp"
46#include "CryptCentreBasedDivisionRule.hpp"
47#include "CryptVertexBasedDivisionRule.hpp"
48
55{
56 // Allow tests to access private members, in order to test computation of private functions e.g. DoCellBirth()
57 friend class TestCryptSimulation2dWithMeshBasedCellPopulation;
58 friend class TestCryptSimulation2dWithVertexBasedCellPopulation;
59
60protected:
61
70 template<class Archive>
71 void serialize(Archive & archive, const unsigned int version)
72 {
73 archive & boost::serialization::base_object<OffLatticeSimulation<2> >(*this);
74
76 archive & p_wnt_wrapper;
77 }
78
84
90 void SetupSolve();
91
92public:
93
103 bool deleteCellPopulationInDestructor=false,
104 bool initialiseCells=true);
105
111 virtual ~CryptSimulation2d();
112
117
123
132 void OutputSimulationParameters(out_stream& rParamsFile);
133};
134
135// Declare identifier for the serializer
138
139namespace boost
140{
141namespace serialization
142{
146template<class Archive>
147inline void save_construct_data(
148 Archive & ar, const CryptSimulation2d * t, const unsigned int file_version)
149{
150 // Save data required to construct instance
151 const AbstractCellPopulation<2>* p_cell_population = &(t->rGetCellPopulation());
152 ar & p_cell_population;
153}
154
158template<class Archive>
159inline void load_construct_data(
160 Archive & ar, CryptSimulation2d * t, const unsigned int file_version)
161{
162 // Retrieve data from archive required to construct new instance
163 AbstractCellPopulation<2>* p_cell_population;
164 ar & p_cell_population;
165
166 // Invoke inplace constructor to initialise instance
167 ::new(t)CryptSimulation2d(*p_cell_population, true, false);
168}
169}
170} // namespace
171
172#endif /*CRYPTSIMULATION2D_HPP_*/
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
void OutputSimulationParameters(out_stream &rParamsFile)
void serialize(Archive &archive, const unsigned int version)
friend class boost::serialization::access
SerializableSingleton< SINGLETON_CLASS > * GetSerializationWrapper() const
static WntConcentration * Instance()