Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
Cylindrical2dMesh.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
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8Square, Oxford OX1 2JD, UK.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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33
34*/
35#ifndef CYLINDRICAL2DMESH_HPP_
36#define CYLINDRICAL2DMESH_HPP_
37
39#include <boost/serialization/base_object.hpp>
40
41#include <cmath>
42#include <map>
43
44#include "MutableMesh.hpp"
45#include "TrianglesMeshWriter.hpp"
46
55class Cylindrical2dMesh : public MutableMesh<2,2>
56{
57 friend class TestCylindrical2dMesh;
58private:
59
61 double mWidth;
62
64 double mTop;
65
67 double mBottom;
68
71
74
76 std::vector<unsigned> mLeftOriginals;
77
79 std::vector<unsigned> mLeftImages;
80
82 std::map<unsigned, unsigned> mImageToLeftOriginalNodeMap;
83
85 std::vector<unsigned> mRightOriginals;
86
88 std::vector<unsigned> mRightImages;
89
91 std::map<unsigned, unsigned> mImageToRightOriginalNodeMap;
92
95
98
100 std::vector<unsigned > mTopHaloNodes;
101
103 std::vector<unsigned > mBottomHaloNodes;
104
107
114 void UpdateTopAndBottom();
115
124 void CreateHaloNodes();
125
132 void CreateMirrorNodes();
133
147
154 void DeleteHaloNodes();
155
167
179
187 unsigned GetCorrespondingNodeIndex(unsigned nodeIndex);
188
199 void UseTheseElementsToDecideMeshing(std::set<unsigned>& rMainSideElements);
200
214 template<class Archive>
215 void serialize(Archive & archive, const unsigned int version)
216 {
217 archive & boost::serialization::base_object<MutableMesh<2,2> >(*this);
218 archive & mWidth;
219 archive & mTop;
220 archive & mBottom;
221 archive & mHaloScalingFactor;
222 archive & mHaloOffset;
223 }
224
225public:
226
232 Cylindrical2dMesh(double width);
233
241 Cylindrical2dMesh(double width, std::vector<Node<2>*> nodes);
242
247
258 void ReMesh(NodeMap& rMap);
259
270 c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
271
282 void SetNode(unsigned index, ChastePoint<2> point, bool concreteMove);
283
293 double GetWidth(const unsigned& rDimension) const;
294
300 void SetHaloScalingFactor(double haloScalingFactor);
301
305 double GetHaloScalingFactor() const;
306
312 void SetHaloOffset(double haloOffset);
313
317 double GetHaloOffset() const;
318
319
326 unsigned AddNode(Node<2>* pNewNode);
327
332};
333
334namespace boost
335{
336namespace serialization
337{
341template<class Archive>
342inline void save_construct_data(
343 Archive & ar, const Cylindrical2dMesh * t, const unsigned int file_version)
344{
345 // Save data required to construct instance
346 const double width = t->GetWidth(0);
347 ar & width;
348}
349
353template<class Archive>
354inline void load_construct_data(
355 Archive & ar, Cylindrical2dMesh * t, const unsigned int file_version)
356{
357 // Retrieve data from archive required to construct new instance
358 double width;
359 ar & width;
360
361 // Invoke inplace constructor to initialise instance
362 ::new(t)Cylindrical2dMesh(width);
363}
364}
365} // namespace ...
366
369
370#endif /*CYLINDRICAL2DMESH_HPP_*/
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
std::vector< unsigned > mLeftImages
unsigned AddNode(Node< 2 > *pNewNode)
unsigned GetCorrespondingNodeIndex(unsigned nodeIndex)
std::vector< unsigned > mRightImages
std::map< unsigned, unsigned > mImageToLeftOriginalNodeMap
double GetWidth(const unsigned &rDimension) const
bool GetInstanceOfMismatchedBoundaryNodes()
void GenerateVectorsOfElementsStraddlingPeriodicBoundaries()
double GetHaloOffset() const
c_vector< double, 2 > GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2)
std::map< unsigned, unsigned > mImageToRightOriginalNodeMap
void SetHaloOffset(double haloOffset)
void SetHaloScalingFactor(double haloScalingFactor)
std::vector< unsigned > mTopHaloNodes
double GetHaloScalingFactor() const
void SetNode(unsigned index, ChastePoint< 2 > point, bool concreteMove)
void serialize(Archive &archive, const unsigned int version)
std::vector< unsigned > mRightOriginals
std::vector< unsigned > mLeftOriginals
friend class boost::serialization::access
std::vector< unsigned > mBottomHaloNodes
std::set< unsigned > mRightPeriodicBoundaryElementIndices
std::set< unsigned > mLeftPeriodicBoundaryElementIndices
void UseTheseElementsToDecideMeshing(std::set< unsigned > &rMainSideElements)
Definition Node.hpp:59