GammaG1CellCycleModel.cpp

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*/
 
#include "GammaG1CellCycleModel.hpp"
#include "StemCellProliferativeType.hpp"
#include "TransitCellProliferativeType.hpp"
#include "DifferentiatedCellProliferativeType.hpp"
 
GammaG1CellCycleModel::GammaG1CellCycleModel()
    : AbstractSimplePhaseBasedCellCycleModel(),
      mShape(DOUBLE_UNSET),
      mScale(DOUBLE_UNSET)
{
}
 
GammaG1CellCycleModel::GammaG1CellCycleModel(const GammaG1CellCycleModel& rModel)
   :  AbstractSimplePhaseBasedCellCycleModel(rModel),
      mShape(rModel.mShape),
      mScale(rModel.mScale)
{
    /*
     * Initialize only those member variables defined in this class.
     *
     * The member variables mCurrentCellCyclePhase, mG1Duration,
     * mMinimumGapDuration, mStemCellG1Duration, mTransitCellG1Duration,
     * mSDuration, mG2Duration and mMDuration are initialized in the
     * AbstractPhaseBasedCellCycleModel constructor.
     *
     * The member variables mBirthTime, mReadyToDivide and mDimension
     * are initialized in the AbstractCellCycleModel constructor.
     *
     * Note that mG1Duration is (re)set as soon as InitialiseDaughterCell()
     * is called on the new cell-cycle model.
     */
}
 
AbstractCellCycleModel* GammaG1CellCycleModel::CreateCellCycleModel()
{
    return new GammaG1CellCycleModel(*this);
}
 
void GammaG1CellCycleModel::SetG1Duration()
{
    if (mpCell->GetCellProliferativeType()->IsType<StemCellProliferativeType>()
        || mpCell->GetCellProliferativeType()->IsType<TransitCellProliferativeType>() )
    {
        // Generate a gamma random number with mShape and mScale
        mG1Duration = RandomNumberGenerator::Instance()->GammaRandomDeviate(mShape, mScale);
    }
    else if (mpCell->GetCellProliferativeType()->IsType<DifferentiatedCellProliferativeType>())
    {
        mG1Duration = DBL_MAX;
    }
    else
    {
        NEVER_REACHED;
    }
}
 
void GammaG1CellCycleModel::SetShape(double shape)
{
    mShape = shape;
}
 
void GammaG1CellCycleModel::SetScale(double scale)
{
    mScale = scale;
}
 
double GammaG1CellCycleModel::GetShape() const
{
    return mShape;
}
 
double GammaG1CellCycleModel::GetScale() const
{
    return mScale;
}
 
void GammaG1CellCycleModel::OutputCellCycleModelParameters(out_stream& rParamsFile)
{
    *rParamsFile << "\t\t\t<Shape>" << mShape << "</Shape>\n";
    *rParamsFile << "\t\t\t<Scale>" << mScale << "</Scale>\n";
 
    AbstractSimplePhaseBasedCellCycleModel::OutputCellCycleModelParameters(rParamsFile);
}
 
// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
CHASTE_CLASS_EXPORT(GammaG1CellCycleModel)