Mirams2010WntOdeSystem.hpp

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*/
 
#ifndef MIRAMS2010WNTODESYSTEM_HPP_
#define MIRAMS2010WNTODESYSTEM_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/shared_ptr.hpp>
 
#include <cmath>
#include <iostream>
 
#include "AbstractOdeSystem.hpp"
#include "AbstractCellMutationState.hpp"
 
class Mirams2010WntOdeSystem : public AbstractOdeSystem
{
private:
 
    double mA;
    double mB;
    double mC;
    double mD;
    double mE;
    double mF;
 
    boost::shared_ptr<AbstractCellMutationState> mpMutationState;
 
    double mWntLevel;
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractOdeSystem>(*this);
    }
 
public:
 
    Mirams2010WntOdeSystem(double wntLevel=0.0,
                           boost::shared_ptr<AbstractCellMutationState> pMutationState=boost::shared_ptr<AbstractCellMutationState>(),
                           std::vector<double> stateVariables=std::vector<double>());
 
    ~Mirams2010WntOdeSystem();
 
    void Init();
 
    void SetMutationState(boost::shared_ptr<AbstractCellMutationState> pMutationState);
 
    const boost::shared_ptr<AbstractCellMutationState> GetMutationState() const;
 
    void EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY);
 
    double GetWntLevel() const;
};
 
// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(Mirams2010WntOdeSystem)
 
namespace boost
{
namespace serialization
{
template<class Archive>
inline void save_construct_data(
    Archive & ar, const Mirams2010WntOdeSystem * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const double wnt_level = t->GetWntLevel();
    ar & wnt_level;
 
    const boost::shared_ptr<AbstractCellMutationState> p_mutation_state = t->GetMutationState();
    ar & p_mutation_state;
 
    const std::vector<double>& state_variables = t->rGetConstStateVariables();
    ar & state_variables;
}
 
template<class Archive>
inline void load_construct_data(
    Archive & ar, Mirams2010WntOdeSystem * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    double wnt_level;
    ar & wnt_level;
 
    boost::shared_ptr<AbstractCellMutationState> p_mutation_state;
    ar & p_mutation_state;
 
    std::vector<double> state_variables;
    ar & state_variables;
 
    // Invoke inplace constructor to initialise instance
    ::new(t)Mirams2010WntOdeSystem(wnt_level, p_mutation_state, state_variables);
}
}
} // namespace ...
 
#endif /*MIRAMS2010WNTODESYSTEM_HPP_*/