NodeBasedCellPopulationWithParticles.hpp

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*/
 
#ifndef NODEBASEDCELLPOPULATIONWITHPARTICLES_HPP_
#define NODEBASEDCELLPOPULATIONWITHPARTICLES_HPP_
 
#include "NodeBasedCellPopulation.hpp"
#include "NodesOnlyMesh.hpp"
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
 
template<unsigned DIM>
class NodeBasedCellPopulationWithParticles : public NodeBasedCellPopulation<DIM>
{
    friend class TestNodeBasedCellPopulationWithParticles;
 
protected:
    void Validate();
 
    virtual void AcceptCellWritersAcrossPopulation();
 
private:
 
    void SetParticles(const std::set<unsigned>& rParticleIndices);
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<NodeBasedCellPopulation<DIM> >(*this);
    }
 
public:
 
    NodeBasedCellPopulationWithParticles(NodesOnlyMesh<DIM>& rMesh,
                            std::vector<CellPtr>& rCells,
                            const std::vector<unsigned> locationIndices=std::vector<unsigned>(),
                            bool deleteMesh=false);
 
    NodeBasedCellPopulationWithParticles(NodesOnlyMesh<DIM>& rMesh);
 
 
    void UpdateParticlesAfterReMesh(NodeMap& rMap);
 
    bool IsParticle(unsigned index);
 
    std::set<unsigned> GetParticleIndices();
 
    CellPtr AddCell(CellPtr pNewCell, CellPtr pParentCell);
 
    virtual void WriteVtkResultsToFile(const std::string& rDirectory);
 
    void OutputCellPopulationParameters(out_stream& rParamsFile);
};
 
#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(NodeBasedCellPopulationWithParticles)
 
namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const NodeBasedCellPopulationWithParticles<DIM> * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const NodesOnlyMesh<DIM>* p_mesh = &(t->rGetMesh());
    ar & p_mesh;
}
 
template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, NodeBasedCellPopulationWithParticles<DIM> * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    NodesOnlyMesh<DIM>* p_mesh;
    ar >> p_mesh;
 
    // Invoke inplace constructor to initialise instance
    ::new(t)NodeBasedCellPopulationWithParticles<DIM>(*p_mesh);
}
}
} // namespace ...
 
#endif /*NODEBASEDCELLPOPULATIONWITHPARTICLES_HPP_*/