PeriodicNodesOnlyMesh.hpp

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*/
 
#ifndef PERIODICNODESONLYMESH_HPP_
#define PERIODICNODESONLYMESH_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
 
#include "NodesOnlyMesh.hpp"
 
template<unsigned SPACE_DIM>
class PeriodicNodesOnlyMesh: public NodesOnlyMesh<SPACE_DIM>
{
private:
    c_vector<double,SPACE_DIM> mWidth;
 
    c_vector<bool,SPACE_DIM> mIsDimPeriodic;
 
    friend class TestPeriodicNodesOnlyMesh;
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<NodesOnlyMesh<SPACE_DIM> >(*this);
        archive & mWidth;
        archive & mIsDimPeriodic;
    }
 
public:
 
    PeriodicNodesOnlyMesh(c_vector<double,SPACE_DIM> width);
 
    virtual void SetUpBoxCollection(double cutOffLength, c_vector<double, 2*SPACE_DIM> domainSize, int numLocalRows = PETSC_DECIDE,  c_vector<bool,SPACE_DIM> isDimPeriodic = zero_vector<bool>(SPACE_DIM));
 
    c_vector<double, SPACE_DIM> GetVectorFromAtoB(const c_vector<double, SPACE_DIM>& rLocation1, const c_vector<double, SPACE_DIM>& rLocation2);
 
    double GetWidth(const unsigned& rDimension) const;
 
    c_vector<double,SPACE_DIM> GetPeriodicWidths() const;
 
    void SetNode(unsigned nodeIndex, ChastePoint<SPACE_DIM> point, bool concreteMove = false);
 
    unsigned AddNode(Node<SPACE_DIM>* pNewNode);
 
    void RefreshMesh();
};
 
namespace boost
{
namespace serialization
{
template<class Archive, unsigned SPACE_DIM>
inline void save_construct_data(
    Archive & ar, const PeriodicNodesOnlyMesh<SPACE_DIM> * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const c_vector<double,SPACE_DIM> width = t->GetPeriodicWidths();
    for ( unsigned i=0; i < SPACE_DIM; i++ )
    {
        ar << width(i);
    }
}
 
template<class Archive, unsigned SPACE_DIM>
inline void load_construct_data(
    Archive & ar, PeriodicNodesOnlyMesh<SPACE_DIM> * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance of the mesh
    c_vector<double,SPACE_DIM> width;
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        double current_width;
        ar & current_width;
        width(i) = current_width;
    }
 
    // Invoke inplace constructor to initialise instance
    ::new(t)PeriodicNodesOnlyMesh<SPACE_DIM>(width);
}
}
} // namespace ...
 
#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(PeriodicNodesOnlyMesh)
 
#endif /*PERIODICNODESONLYMESH_HPP_*/