- c -

• CalcActiveTensionResidual() : NhsSystemWithImplicitSolver
• Calculate() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateActionPotentialDuration() : PropagationPropertiesCalculator
• CalculateActionPotentialDurations() : CellProperties
• CalculateAllActionPotentialDurations() : PropagationPropertiesCalculator
• CalculateAllConductionVelocities() : PropagationPropertiesCalculator
• CalculateAllMaximumUpstrokeVelocities() : PropagationPropertiesCalculator
• CalculateBoundaryOfFlaggedRegion() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateCalciumTrop50() : NhsCellularMechanicsOdeSystem
• CalculateCentroid() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalculateCircumsphere() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateCircumsphereVolume() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateConductionVelocity() : PropagationPropertiesCalculator
• CalculateContainingBox() : NodeBoxCollection< DIM >
• CalculateDividingCellCentreLocations() : CryptSimulation2d , TissueSimulation< DIM >
• CalculateFibreOrientations() : PapillaryFibreCalculator
• CalculateForceBetweenNodes() : AbstractTwoBodyInteractionForce< DIM > , GeneralisedLinearSpringForce< DIM > , MeshBasedTissueWithGhostNodes< DIM >
• CalculateInterpolationWeights() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInterpolationWeightsWithProjection() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInverseJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateLocalBoxes() : NodeBoxCollection< DIM >
• CalculateMaximumUpstrokeVelocity() : PropagationPropertiesCalculator
• CalculateNextTime() : TimeStepper
• CalculateNextYValue() : RungeKutta2IvpOdeSolver , RungeKutta4IvpOdeSolver , RungeKuttaFehlbergIvpOdeSolver , AbstractOneStepIvpOdeSolver , BackwardEulerIvpOdeSolver , EulerIvpOdeSolver
• CalculateNodePairs() : NodeBoxCollection< DIM >
• CalculateOnElement() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateOwnership() : DistributedVectorFactory
• CalculatePeakMembranePotential() : PropagationPropertiesCalculator
• CalculateProperties() : CellProperties
• CalculatePsi() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateQuality() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateRelativeWallPosition() : HeartGeometryInformation< SPACE_DIM >
• CalculateResidualNorm() : AbstractNonlinearElasticityAssembler< DIM >
• CalculateRootFunction() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateStoppingEvent() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateT0() : NhsCellularMechanicsOdeSystem
• CalculateUpstrokeTimes() : PropagationPropertiesCalculator
• CalculateWeightedDirection() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalcZResidual() : NhsSystemWithImplicitSolver
• CardiacElectroMechanicsProblem() : CardiacElectroMechanicsProblem< DIM >
• CardiacElectroMechProbRegularGeom() : CardiacElectroMechProbRegularGeom< DIM >
• CardiacNewtonSolver() : CardiacNewtonSolver< SIZE >
• CartToEucliDistance() : DistanceMapCalculator< SPACE_DIM >
• CellIsInSection() : CryptStatistics
• CellIsInSectionPeriodic() : CryptStatistics
• CellProperties() : CellProperties
• CellsCanDifferentiate() : AbstractCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
• CellwiseData() : CellwiseData< DIM >
• CellwiseOdeSystemInformation() : CellwiseOdeSystemInformation< ODE_SYSTEM >
• ChangeCellTypeDueToCurrentBetaCateninLevel() : AbstractWntOdeBasedCellCycleModel , IngeWntSwatCellCycleModel , WntCellCycleModel
• ChasteCuboid() : ChasteCuboid
• ChastePoint() : ChastePoint< DIM > , ChastePoint< 0 >
• CheckCache() : PetscTools
• CheckCompatibilityCondition() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• CheckForPetsc() : DistributedVectorFactory
• CheckTimeSteps() : HeartConfig
• CheckTissueCellPointers() : MeshBasedTissue< DIM >
• CheckUnitsName() : ColumnDataWriter , Hdf5DataWriter
• CheckVariableName() : ColumnDataWriter , Hdf5DataWriter
• CheckVectorSizes() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CheckVentricleAlignment() : StreeterFibreGenerator< SPACE_DIM >
• CheckVoronoi() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• Chunk() : DistributedVector::Chunk
• Clear() : AbstractStimulusFunction , MultiStimulus , MutableMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedTissue< DIM >
• Close() : LogFile , Hdf5DataReader , AbstractDataWriter , ColumnDataWriter , Hdf5DataWriter , ParallelColumnDataWriter
• CloseFibreOrientationFile() : AbstractConductivityTensors< SPACE_DIM >
• CloseFiles() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• CloseFilesAndPostProcess() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CloseOutputFiles() : AbstractTissue< DIM > , MeshBasedTissue< DIM >
• CmguiWriter() : CmguiWriter
• ColumnDataReader() : ColumnDataReader
• ColumnDataWriter() : ColumnDataWriter
• CombinedOdeSystem() : CombinedOdeSystem
• CombinedOdeSystemInformation() : CombinedOdeSystemInformation
• CommonConstructor() : Node< SPACE_DIM >
• CommonCopy() : TissueCell
• Compute() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractCardiacCell
• Compute1stPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• Compute2ndPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeAndSetAngle() : VertexAndAngle< DIM >
• ComputeBasisFunction() : LinearBasisFunction< ELEM_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEM_DIM > , QuadraticBasisFunction< 0 > , LinearBasisFunction< ELEM_DIM >
• ComputeBasisFunctionDerivative() : LinearBasisFunction< ELEM_DIM > , QuadraticBasisFunction< ELEM_DIM > , LinearBasisFunction< ELEM_DIM >
• ComputeBasisFunctionDerivatives() : LinearBasisFunction< ELEM_DIM > , QuadraticBasisFunction< ELEM_DIM >
• ComputeBasisFunctions() : LinearBasisFunction< ELEM_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEM_DIM > , QuadraticBasisFunction< 0 >
• ComputeCauchyStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeConstantInUSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeConstantInUSourceTermAtNode() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeDiffusionTerm() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeDiffusionTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeDistanceMap() : DistanceMapCalculator< SPACE_DIM >
• ComputeDuDtCoefficientFunction() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM >
• ComputeExceptVoltage() : AbstractCardiacCell , AbstractBackwardEulerCardiacCell< SIZE > , FakeBathCell
• ComputeJacobian() : BackwardEulerIvpOdeSolver , AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerLuoRudyIModel1991
• ComputeLinearInUCoeffInSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeLinearInUCoeffInSourceTermAtNode() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeLinearSourceTerm() : AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeLinearSourceTermAtNode() : AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM >
• ComputeMatrixTerm() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeMeshPartitioning() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ComputeNonlinearSourceTerm() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNonlinearSourceTermAtNode() : AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , MonodomainPde< ELEM_DIM, SPACE_DIM >
• ComputeNonlinearSourceTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNorm() : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
• ComputeNumericalJacobian() : BackwardEulerIvpOdeSolver
• ComputeOneStepExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerFoxModel2002Modified , BackwardEulerLuoRudyIModel1991
• ComputeResidual() : AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerLuoRudyIModel1991 , BackwardEulerIvpOdeSolver
• ComputeStressAndStressDerivative() : AbstractIsotropicIncompressibleMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d , AbstractIncompressibleMaterialLaw< DIM >
• ComputeTransformedBasisFunctionDerivatives() : LinearBasisFunction< ELEM_DIM > , QuadraticBasisFunction< ELEM_DIM > , AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• ComputeVectorSurfaceTerm() : SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE >
• ComputeVectorTerm() : SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > , BidomainWithBathRhsMatrixAssembler< DIM >
• Configure() : CombinedOdeSystem
• ConstBoundaryCondition() : ConstBoundaryCondition< SPACE_DIM >
• Construct() : CuboidMeshConstructor< DIM >
• ConstructCuboid() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructFromMeshReader() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructHyperCube() : CuboidMeshConstructor< DIM >
• ConstructLinearMesh() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructRectangularMesh() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructStructureTensors() : PapillaryFibreCalculator
• ConstructVectorForMatrixBasedRhsAssembly() : MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ContainingBoundaryElementIterator() : Node< SPACE_DIM >::ContainingBoundaryElementIterator
• ContainingBoundaryElementsBegin() : Node< SPACE_DIM >
• ContainingBoundaryElementsEnd() : Node< SPACE_DIM >
• ContainingElementIterator() : Node< SPACE_DIM >::ContainingElementIterator
• ContainingElementsBegin() : Node< SPACE_DIM >
• ContainingElementsEnd() : Node< SPACE_DIM >
• Converge() : AbstractUntemplatedConvergenceTester , AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• ConvertOutputToMeshalyzerFormat() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• ConvertTicksToMilliseconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ConvertTicksToSeconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CorrectNonPeriodicMesh() : Cylindrical2dMesh
• CreateAssembler() : BidomainProblem< DIM > , MonodomainProblem< ELEM_DIM, SPACE_DIM > , AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CreateCardiacCellForNode() : AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
• CreateCardiacCellForTissueNode() : QuarterStimulusCellFactory< CELL, DIM > , AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM > , ZeroStimulusCellFactory< CELL, DIM > , PlaneStimulusCellFactory< CELL, ELEM_DIM, SPACE_DIM >
• CreateCardiacPde() : BidomainProblem< DIM > , MonodomainProblem< ELEM_DIM, SPACE_DIM > , AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CreateCellCycleModel() : StochasticWntCellCycleModel , SimpleWntCellCycleModel , WntCellCycleModel , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , IngeWntSwatCellCycleModelCellsGenerator< DIM > , IngeWntSwatCellCycleModel , TysonNovakCellCycleModel , WntCellCycleModelCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModel , StochasticWntCellCycleModelCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , AbstractCellsGenerator< DIM > , StochasticDurationGenerationBasedCellCycleModel , SimpleWntCellCycleModelCellsGenerator< DIM > , TysonNovakCellCycleModelCellsGenerator< DIM > , AbstractCellCycleModel
• CreateCellPair() : MeshBasedTissue< DIM >
• CreateConstantInitialGuess() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• CreateDistributedVector() : DistributedVectorFactory
• CreateFixedDimensionFile() : ColumnDataWriter
• CreateHaloNodes() : Cylindrical2dMesh
• CreateInfoFile() : ColumnDataWriter
• CreateInitialCondition() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
• CreateMirrorNodes() : Cylindrical2dMesh
• CreateOutputFiles() : MeshBasedTissue< DIM > , AbstractTissue< DIM >
• CreateVec() : DistributedVectorFactory , PetscTools
• CreateVoronoiTessellation() : MeshBasedTissue< DIM >
• CryptSimulation2d() : CryptSimulation2d
• CryptStatistics() : CryptStatistics
• Cylindrical2dMesh() : Cylindrical2dMesh