Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
AbstractAssemblerSolverHybrid.hpp
1
2/*
3
4Copyright (c) 2005-2024, University of Oxford.
5All rights reserved.
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11This file is part of Chaste.
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13Redistribution and use in source and binary forms, with or without
14modification, are permitted provided that the following conditions are met:
15 * Redistributions of source code must retain the above copyright notice,
16 this list of conditions and the following disclaimer.
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20 * Neither the name of the University of Oxford nor the names of its
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24THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
25AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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35*/
36
37#ifndef ABSTRACTASSEMBLERSOLVERHYBRID_HPP_
38#define ABSTRACTASSEMBLERSOLVERHYBRID_HPP_
39
40#include "AbstractFeVolumeIntegralAssembler.hpp"
41#include "AbstractLinearPdeSolver.hpp"
42#include "NaturalNeumannSurfaceTermAssembler.hpp"
43
54template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, InterpolationLevel INTERPOLATION_LEVEL>
56 : public AbstractFeVolumeIntegralAssembler<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, INTERPOLATION_LEVEL>
57{
58protected:
59
65
68
69
70public:
71
80 : AbstractFeVolumeIntegralAssembler<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, INTERPOLATION_LEVEL>(pMesh),
81 mNaturalNeumannSurfaceTermAssembler(pMesh,pBoundaryConditions),
82 mpBoundaryConditions(pBoundaryConditions)
83 {
84 assert(pMesh);
85 assert(pBoundaryConditions);
86 }
87
92 {
93 }
94
107 void SetupGivenLinearSystem(Vec currentSolution, bool computeMatrix, LinearSystem* pLinearSystem);
108};
109
110template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, InterpolationLevel INTERPOLATION_LEVEL>
112 bool computeMatrix,
113 LinearSystem* pLinearSystem)
114{
115 assert(pLinearSystem->rGetLhsMatrix() != nullptr);
116 assert(pLinearSystem->rGetRhsVector() != nullptr);
117
118 // Assemble the matrix and vector calling methods on AbstractFeVolumeIntegralAssembler
119 this->SetMatrixToAssemble(pLinearSystem->rGetLhsMatrix());
120 this->SetVectorToAssemble(pLinearSystem->rGetRhsVector(), true);
121
122 if (currentSolution != nullptr)
123 {
124 this->SetCurrentSolution(currentSolution);
125 }
126
127 if (computeMatrix)
128 {
129 this->Assemble();
130 }
131 else
132 {
133 this->AssembleVector();
134 }
135
136 // Add the Neumann boundary conditions. The boundary conditions put into the BoundaryConditionsContainer
137 // are assumed to be natural Neumann BCs.
138 mNaturalNeumannSurfaceTermAssembler.SetVectorToAssemble(pLinearSystem->rGetRhsVector(), false);
139 mNaturalNeumannSurfaceTermAssembler.Assemble();
140
141 pLinearSystem->FinaliseRhsVector();
142 pLinearSystem->SwitchWriteModeLhsMatrix();
143
144 // add Dirichlet BCs
145 mpBoundaryConditions->ApplyDirichletToLinearProblem(*pLinearSystem, true);
146
148 //mpBoundaryConditions->ApplyPeriodicBcsToLinearProblem(*pLinearSystem, true);
149
150 pLinearSystem->FinaliseRhsVector();
151 pLinearSystem->FinaliseLhsMatrix();
152}
153
154#endif /*ABSTRACTASSEMBLERSOLVERHYBRID_HPP_*/
void SetupGivenLinearSystem(Vec currentSolution, bool computeMatrix, LinearSystem *pLinearSystem)
AbstractAssemblerSolverHybrid(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *pBoundaryConditions)
BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > * mpBoundaryConditions
NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > mNaturalNeumannSurfaceTermAssembler
void FinaliseLhsMatrix()
Mat & rGetLhsMatrix()
void SwitchWriteModeLhsMatrix()
void FinaliseRhsVector()
Vec & rGetRhsVector()