Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
AbstractOneStepIvpOdeSolver.cpp
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34*/
35
36#include "AbstractOneStepIvpOdeSolver.hpp"
37#include "TimeStepper.hpp"
38#include "Exception.hpp"
39#include <cmath>
40
42 std::vector<double>& rYValues,
43 double startTime,
44 double endTime,
45 double timeStep,
46 double timeSampling)
47{
48 assert(rYValues.size()==pOdeSystem->GetNumberOfStateVariables());
49 assert(endTime > startTime);
50 assert(timeStep > 0.0);
51 assert(timeSampling >= timeStep);
52
54 if (pOdeSystem->CalculateStoppingEvent(startTime, rYValues) == true)
55 {
56 EXCEPTION("(Solve with sampling) Stopping event is true for initial condition");
57 }
58 TimeStepper stepper(startTime, endTime, timeSampling);
59
60 // setup solutions if output is required
61 OdeSolution solutions;
62 solutions.SetNumberOfTimeSteps(stepper.EstimateTimeSteps());
63 solutions.rGetSolutions().push_back(rYValues);
64 solutions.rGetTimes().push_back(startTime);
65 solutions.SetOdeSystemInformation(pOdeSystem->GetSystemInformation());
66 solutions.SetSolverName( GetIdentifier() );
67
68 mWorkingMemory.resize(rYValues.size());
69
70 // Solve the ODE system
71 while ( !stepper.IsTimeAtEnd() && !mStoppingEventOccurred )
72 {
73 InternalSolve(pOdeSystem, rYValues, mWorkingMemory, stepper.GetTime(), stepper.GetNextTime(), timeStep);
74 stepper.AdvanceOneTimeStep();
75 // write current solution into solutions
76 solutions.rGetSolutions().push_back(rYValues);
77 // Push back new time into the time solution vector
79 {
80 solutions.rGetTimes().push_back(mStoppingTime);
81 }
82 else
83 {
84 solutions.rGetTimes().push_back(stepper.GetTime());
85 }
86 }
87
88 // stepper.EstimateTimeSteps may have been an overestimate...
90 return solutions;
91}
92
94 std::vector<double>& rYValues,
95 double startTime,
96 double endTime,
97 double timeStep)
98{
99 assert(rYValues.size()==pOdeSystem->GetNumberOfStateVariables());
100 assert(endTime > startTime);
101 assert(timeStep > 0.0);
102
104 if (pOdeSystem->CalculateStoppingEvent(startTime, rYValues) == true)
105 {
106 EXCEPTION("(Solve without sampling) Stopping event is true for initial condition");
107 }
108
109 // Perhaps resize working memory
110 mWorkingMemory.resize(rYValues.size());
111 // And solve...
112 InternalSolve(pOdeSystem, rYValues, mWorkingMemory, startTime, endTime, timeStep);
113}
114
116 std::vector<double>& rYValues,
117 std::vector<double>& rWorkingMemory,
118 double startTime,
119 double endTime,
120 double timeStep)
121{
122 TimeStepper stepper(startTime, endTime, timeStep);
123 // Solve the ODE system
124
125 // Which of our vectors holds the current solution?
126 // If this is true, it's in rYValues, otherwise it's in rWorkingMemory.
127 bool curr_is_curr = false;
128
129 // should never get here if this bool has been set to true;
130 assert(!mStoppingEventOccurred);
131 while ( !stepper.IsTimeAtEnd() && !mStoppingEventOccurred )
132 {
133 curr_is_curr = !curr_is_curr;
134 // Function that calls the appropriate one-step solver
135 CalculateNextYValue(pOdeSystem,
136 stepper.GetNextTimeStep(),
137 stepper.GetTime(),
138 curr_is_curr ? rYValues : rWorkingMemory,
139 curr_is_curr ? rWorkingMemory : rYValues);
140 stepper.AdvanceOneTimeStep();
141 if (pOdeSystem->CalculateStoppingEvent(stepper.GetTime(),
142 curr_is_curr ? rWorkingMemory : rYValues) == true)
143 {
144 mStoppingTime = stepper.GetTime();
146 }
147 }
148 // Final answer must be in rYValues
149 if (curr_is_curr)
150 {
151 rYValues.assign(rWorkingMemory.begin(), rWorkingMemory.end());
152 }
153}
#define EXCEPTION(message)
virtual bool CalculateStoppingEvent(double time, const std::vector< double > &rY)
virtual void CalculateNextYValue(AbstractOdeSystem *pAbstractOdeSystem, double timeStep, double time, std::vector< double > &rCurrentYValues, std::vector< double > &rNextYValues)=0
virtual OdeSolution Solve(AbstractOdeSystem *pAbstractOdeSystem, std::vector< double > &rYValues, double startTime, double endTime, double timeStep, double timeSampling)
virtual void InternalSolve(AbstractOdeSystem *pAbstractOdeSystem, std::vector< double > &rCurrentYValues, std::vector< double > &rWorkingMemory, double startTime, double endTime, double timeStep)
boost::shared_ptr< const AbstractOdeSystemInformation > GetSystemInformation() const
std::string GetIdentifier() const
void SetNumberOfTimeSteps(unsigned numTimeSteps)
std::vector< std::vector< double > > & rGetSolutions()
std::vector< double > & rGetTimes()
void SetSolverName(std::string solverName)
void SetOdeSystemInformation(boost::shared_ptr< const AbstractOdeSystemInformation > pOdeSystemInfo)
double GetNextTimeStep()
bool IsTimeAtEnd() const
unsigned GetTotalTimeStepsTaken() const
double GetTime() const
void AdvanceOneTimeStep()
double GetNextTime() const
unsigned EstimateTimeSteps() const