Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
CellIdWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
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7University of Oxford, having an administrative office at Wellington
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9
10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#include "CellIdWriter.hpp"
37#include "AbstractCellPopulation.hpp"
38
39template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
41 : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("loggedcell.dat")
42{
43 this->mVtkCellDataName = "Cell IDs";
44}
45
46template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
48{
49 double cell_id = pCell->GetCellId();
50 return cell_id;
51}
52
53template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
55{
56 unsigned cell_id = pCell->GetCellId();
57 unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
58 *this->mpOutStream << " " << cell_id << " " << location_index;
59
60 c_vector<double, SPACE_DIM> coords = pCellPopulation->GetLocationOfCellCentre(pCell);
61 for (unsigned i=0; i<SPACE_DIM; i++)
62 {
63 *this->mpOutStream << " " << coords[i];
64 }
65}
66
67// Explicit instantiation
68template class CellIdWriter<1,1>;
69template class CellIdWriter<1,2>;
70template class CellIdWriter<2,2>;
71template class CellIdWriter<1,3>;
72template class CellIdWriter<2,3>;
73template class CellIdWriter<3,3>;
74
76// Declare identifier for the serializer
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
virtual c_vector< double, SPACE_DIM > GetLocationOfCellCentre(CellPtr pCell)=0
unsigned GetLocationIndexUsingCell(CellPtr pCell)
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)