ImmersedBoundaryBoundaryCellWriter.cpp

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#include "ImmersedBoundaryBoundaryCellWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "ImmersedBoundaryCellPopulation.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ImmersedBoundaryBoundaryCellWriter<ELEMENT_DIM, SPACE_DIM>::ImmersedBoundaryBoundaryCellWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("ib_boundarycell.dat")
{
    this->mVtkCellDataName = "Boundary cell";
}
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double ImmersedBoundaryBoundaryCellWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(
    CellPtr pCell,
    AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    // Ensure the boundary cells are tagged correctly.
    // This will only do much work at most once per time step (the other times will be a low-cost check).
    dynamic_cast<ImmersedBoundaryCellPopulation<SPACE_DIM>*>(pCellPopulation)->rGetMesh().UpdateNodeLocationsVoronoiDiagramIfOutOfDate();
 
    bool boundary = dynamic_cast<ImmersedBoundaryCellPopulation<SPACE_DIM>*>(pCellPopulation)->IsCellOnBoundary(pCell);
 
    return static_cast<double>(boundary);
}
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void ImmersedBoundaryBoundaryCellWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(
    CellPtr pCell,
    AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    unsigned cell_id = pCell->GetCellId();
    c_vector<double, SPACE_DIM> centre_location = pCellPopulation->GetLocationOfCellCentre(pCell);
 
    double boundary = this->GetCellDataForVtkOutput(pCell, pCellPopulation);
 
    *this->mpOutStream << location_index << " " << cell_id << " ";
    for (unsigned i=0; i<SPACE_DIM; ++i)
    {
        *this->mpOutStream << centre_location[i] << " ";
    }
 
    *this->mpOutStream << boundary << " ";
}
 
// Explicit instantiation
template class ImmersedBoundaryBoundaryCellWriter<1,1>;
template class ImmersedBoundaryBoundaryCellWriter<1,2>;
template class ImmersedBoundaryBoundaryCellWriter<2,2>;
template class ImmersedBoundaryBoundaryCellWriter<1,3>;
template class ImmersedBoundaryBoundaryCellWriter<2,3>;
template class ImmersedBoundaryBoundaryCellWriter<3,3>;
 
#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(ImmersedBoundaryBoundaryCellWriter)