Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
ObjectCommunicator.hpp
1/*
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3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#ifndef _OBJECTCOMMUNICATOR_HPP_
37#define _OBJECTCOMMUNICATOR_HPP_
38
39// Serialisation headers - must come first
40#include <boost/archive/binary_oarchive.hpp>
41#include <boost/archive/binary_iarchive.hpp>
42
43#include <boost/scoped_array.hpp>
44#include <boost/shared_ptr.hpp>
45#include <boost/serialization/shared_ptr.hpp>
46#include "PetscTools.hpp" // For MPI methods
47#include "Exception.hpp"
48
49const unsigned MAX_BUFFER_SIZE = 1000000;
50
56template<typename CLASS>
58{
59private:
60
63
67 std::vector<char* > mSendBuffer;
68
72 std::vector<std::string> mSendString;
73
76
79
82
85
86public:
87
92
100 void SendObject(boost::shared_ptr<CLASS> const pObject, unsigned destinationProcess, unsigned tag);
101
109 void ISendObject(boost::shared_ptr<CLASS> const pObject, unsigned destinationProcess, unsigned tag);
110
120 boost::shared_ptr<CLASS> RecvObject(unsigned sourceProcess, unsigned tag, MPI_Status& status);
121
128 void IRecvObject(unsigned sourceProcess, unsigned tag);
129
135 boost::shared_ptr<CLASS> GetRecvObject();
136
149 boost::shared_ptr<CLASS> SendRecvObject(boost::shared_ptr<CLASS> const pSendObject, unsigned destinationProcess, unsigned sendTag, unsigned sourceProcess, unsigned sourceTag, MPI_Status& status);
150};
151
152#include <sstream>
153#include <string>
154#include <cstring>
155
156// Implementation needs to be here, as CLASS could be anything
157template<typename CLASS>
164
165template<typename CLASS>
166void ObjectCommunicator<CLASS>::SendObject(boost::shared_ptr<CLASS> const pObject, unsigned destinationProcess, unsigned tag)
167{
168 // Create an output archive
169 std::ostringstream ss(std::ios::binary);
170 boost::archive::binary_oarchive output_arch(ss);
171
172 output_arch << pObject;
173
174 const std::string send_msg = ss.str();
175
176 // Get + send string length
177 unsigned string_length = send_msg.size();
178 MPI_Send(&string_length, 1, MPI_UNSIGNED, destinationProcess, tag, PetscTools::GetWorld());
179
180 // Send archive data
181 // The buffer is treated as const, but not specified as such by MPI_Send's signature
182 char* send_buf = const_cast<char*>(send_msg.data());
183 MPI_Send(send_buf, string_length, MPI_BYTE, destinationProcess, tag, PetscTools::GetWorld());
184}
185
186template<typename CLASS>
187void ObjectCommunicator<CLASS>::ISendObject(boost::shared_ptr<CLASS> const pObject, unsigned destinationProcess, unsigned tag)
188{
189 MPI_Request request;
190
191 // Create an output archive
192 std::ostringstream ss(std::ios::binary);
193 boost::archive::binary_oarchive output_arch(ss);
194
195 output_arch << pObject;
196
197 mSendString[destinationProcess] = ss.str();
198 mSendBufferLength = mSendString[destinationProcess].size();
199
200 // Make sure we are not going to overrun the asynchronous buffer size.
201 assert(mSendBufferLength < MAX_BUFFER_SIZE);
202
203 // Send archive data
204 // The buffer is treated as const, but not specified as such by MPI_Send's signature
205 mSendBuffer[destinationProcess] = const_cast<char*>(mSendString[destinationProcess].data());
206 MPI_Isend(mSendBuffer[destinationProcess], mSendBufferLength, MPI_BYTE, destinationProcess, tag, PetscTools::GetWorld(), &request);
207 MPI_Request_free(&request); //This is evil because it allows for another non-blocking send to overwrite the buffer
208}
209
210template<typename CLASS>
211boost::shared_ptr<CLASS> ObjectCommunicator<CLASS>::RecvObject(unsigned sourceProcess, unsigned tag, MPI_Status& status)
212{
213 unsigned string_length = 0;
214 MPI_Recv(&string_length, 1, MPI_UNSIGNED, sourceProcess, tag, PetscTools::GetWorld(), &status);
215
216 char* recv_array = new char[string_length];
217 MPI_Recv(recv_array, string_length, MPI_BYTE, sourceProcess , tag, PetscTools::GetWorld(), &status);
218
219 // Extract a proper object from the buffer
220 std::string recv_string(recv_array, string_length);
221 delete[] recv_array;
222 std::istringstream ss(recv_string, std::ios::binary);
223
224 boost::shared_ptr<CLASS> p_recv_object(new CLASS);
225 boost::archive::binary_iarchive input_arch(ss);
226
227 input_arch >> p_recv_object;
228
229 return p_recv_object;
230}
231
232template<typename CLASS>
233void ObjectCommunicator<CLASS>::IRecvObject(unsigned sourceProcess, unsigned tag)
234{
235 assert(!mIsWriting); // Make sure the buffers are not already being used by a previous call to IRecvObject.
236
237 mIsWriting = true;
238
239 mRecvBuffer = new char[MAX_BUFFER_SIZE];
240 MPI_Irecv(mRecvBuffer, MAX_BUFFER_SIZE, MPI_BYTE, sourceProcess, tag, PetscTools::GetWorld(), &mMpiRequest);
241}
242
243template<typename CLASS>
245{
246 if (!mIsWriting)
247 {
248 EXCEPTION("No object to receive in ObjectCommunicator::GetRecvObject");
249 }
250
251 MPI_Status return_status;
252
253 MPI_Wait(&mMpiRequest, &return_status);
254
255 int recv_size;
256 MPI_Get_count(&return_status, MPI_BYTE, &recv_size);
257
258 // Extract a proper object from the buffer
259 std::string recv_string(mRecvBuffer, recv_size);
260 std::istringstream ss(recv_string, std::ios::binary);
261
262 boost::shared_ptr<CLASS> p_recv_object(new CLASS);
263 boost::archive::binary_iarchive input_arch(ss);
264
265 input_arch >> p_recv_object;
266
267 // Tidy up
268 delete[] mRecvBuffer;
269
270 mIsWriting = false;
271
272 return p_recv_object;
273}
274
275template<typename CLASS>
276boost::shared_ptr<CLASS> ObjectCommunicator<CLASS>::SendRecvObject(boost::shared_ptr<CLASS> const pSendObject, unsigned destinationProcess, unsigned sendTag, unsigned sourceProcess, unsigned sourceTag, MPI_Status& status)
277{
278 // Create an output archive
279 std::ostringstream oss(std::ios::binary);
280 boost::archive::binary_oarchive output_arch(oss);
281
282 output_arch << pSendObject;
283
284 std::string send_msg = oss.str();
285
286 // Get + send string length
287 unsigned send_string_length = send_msg.size();
288 unsigned recv_string_length;
289
290 MPI_Sendrecv(&send_string_length, 1, MPI_UNSIGNED, destinationProcess, sendTag, &recv_string_length, 1, MPI_UNSIGNED, sourceProcess, sourceTag, PetscTools::GetWorld(), &status);
291
292 boost::scoped_array<char> recv_array(new char[recv_string_length]);
293
294 // Send archive data
295 char* send_buf = const_cast<char*>(send_msg.data());
296 MPI_Sendrecv(send_buf, send_string_length, MPI_BYTE, destinationProcess, sendTag, recv_array.get(), recv_string_length, MPI_BYTE, sourceProcess, sourceTag, PetscTools::GetWorld(), &status);
297
298 // Extract received object
299 std::string recv_string(recv_array.get(), recv_string_length);
300 std::istringstream iss(recv_string, std::ios::binary);
301
302 boost::shared_ptr<CLASS> p_recv_object(new CLASS);
303 boost::archive::binary_iarchive input_arch(iss);
304
305 input_arch >> p_recv_object;
306
307 return p_recv_object;
308}
309
310#endif // _OBJECTCOMMUNICATOR_HPP_
#define EXCEPTION(message)
boost::shared_ptr< CLASS > GetRecvObject()
boost::shared_ptr< CLASS > SendRecvObject(boost::shared_ptr< CLASS > const pSendObject, unsigned destinationProcess, unsigned sendTag, unsigned sourceProcess, unsigned sourceTag, MPI_Status &status)
void SendObject(boost::shared_ptr< CLASS > const pObject, unsigned destinationProcess, unsigned tag)
std::vector< char * > mSendBuffer
boost::shared_ptr< CLASS > RecvObject(unsigned sourceProcess, unsigned tag, MPI_Status &status)
void ISendObject(boost::shared_ptr< CLASS > const pObject, unsigned destinationProcess, unsigned tag)
void IRecvObject(unsigned sourceProcess, unsigned tag)
std::vector< std::string > mSendString
static MPI_Comm GetWorld()
static unsigned GetNumProcs()