Chaste: Class Members

- m -

m128o4275 : RungeKuttaFehlbergIvpOdeSolver
m12o13 : RungeKuttaFehlbergIvpOdeSolver
m1408o2565 : RungeKuttaFehlbergIvpOdeSolver
m1859o4104 : RungeKuttaFehlbergIvpOdeSolver
m1932o2197 : RungeKuttaFehlbergIvpOdeSolver
m1o360 : RungeKuttaFehlbergIvpOdeSolver
m2197o4104 : RungeKuttaFehlbergIvpOdeSolver
m2197o75240 : RungeKuttaFehlbergIvpOdeSolver
m25o216 : RungeKuttaFehlbergIvpOdeSolver
m2o55 : RungeKuttaFehlbergIvpOdeSolver
m3544o2565 : RungeKuttaFehlbergIvpOdeSolver
m3680o513 : RungeKuttaFehlbergIvpOdeSolver
m439o216 : RungeKuttaFehlbergIvpOdeSolver
m7200o2197 : RungeKuttaFehlbergIvpOdeSolver
m7296o2197 : RungeKuttaFehlbergIvpOdeSolver
m845o4104 : RungeKuttaFehlbergIvpOdeSolver
m8o27 : RungeKuttaFehlbergIvpOdeSolver
mA : NhsContractionModel , ExponentialMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d , CryptProjectionForce , Mirams2010WntOdeSystem
ma1 : Alarcon2004OxygenBasedCellCycleOdeSystem
mA1 : NhsContractionModel
ma2 : Alarcon2004OxygenBasedCellCycleOdeSystem
mA2 : NhsContractionModel
ma2d : WntCellCycleOdeSystem
ma3 : Alarcon2004OxygenBasedCellCycleOdeSystem
mA3 : NhsContractionModel
ma3d : WntCellCycleOdeSystem
ma4 : Alarcon2004OxygenBasedCellCycleOdeSystem
ma4d : WntCellCycleOdeSystem
ma5d : WntCellCycleOdeSystem
mAbsPath : FileFinder
mAbsTol : AbstractCvodeCell , CvodeAdaptor
mActivationTime : Kerchoffs2003ContractionModel
mActivationVoltage : Kerchoffs2003ContractionModel
mActivePriorityNodeIndexQueue : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mad : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mAddedNodes : MutableMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM >
mAdditionalFieldHeader : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mAdditionalFieldNames : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mAdditionalTimes : TimeStepper
mAdditionalTimesReached : TimeStepper
mAllocatedMaterialLawMemory : AbstractCardiacMechanicsSolver< DIM >
mAllocatedMemory : CellwiseData< DIM >
mAllocatedMemoryForForceCollection : CellBasedSimulation< DIM >
mAllocatedMemoryForMesh : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mAlpha : FitzHughNagumo1961OdeSystem , PolynomialMaterialLaw3d
mAlpha0 : NhsContractionModel
mAlpha1 : NhsContractionModel
mAlpha2 : NhsContractionModel
mAlpha3 : NhsContractionModel
mAlphaR1 : NhsContractionModel
mAlphaR2 : NhsContractionModel
mAncestor : Cell
mAncillaryFilename : ColumnDataReader
mAncillaryRowStartPosition : ColumnDataWriter
mAncillaryRowWidth : ColumnDataWriter
mAnyNonZeroNeumannConditionsForUnknown : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mApoptosisTime : Cell
mApoptoticSpringCompressionStiffness : LinearSpringWithVariableSpringConstantsForce< DIM >
mApoptoticSpringTensionStiffness : LinearSpringWithVariableSpringConstantsForce< DIM >
mApplyNeummanBoundaryConditionsToVector : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mAreaBasedDampingConstantParameter : MeshBasedCellPopulation< DIM >
mAreActive : Electrodes< DIM >
mAssembleMatrix : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mAssembleVector : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
MASTER_RANK : PetscTools
MAX_DATASET_RANK : Hdf5DataReader
MAX_NEWTON_ABS_TOL : AbstractNonlinearElasticitySolver< DIM >
mB : ExponentialMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d , Alarcon2004OxygenBasedCellCycleOdeSystem , CryptProjectionForce , Mirams2010WntOdeSystem
mb3 : Alarcon2004OxygenBasedCellCycleOdeSystem
mb4 : Alarcon2004OxygenBasedCellCycleOdeSystem
mBaseDirectory : OutputDirectoryFifoQueue
mBaseName : Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter , AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
mBathSimulation : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mBeta0 : NhsContractionModel
mBeta1 : NhsContractionModel
mBetaCateninDivisionThreshold : SingleOdeWntCellCycleModel
mBetaCatSpringScaler : LinearSpringWithVariableSpringConstantsForce< DIM >
mBirthTime : AbstractCellCycleModel
mBloodLust : TargetedCellKiller< DIM >
mBodyForce : AbstractNonlinearElasticitySolver< DIM >
mBottom : Cylindrical2dMesh , HoneycombMeshGenerator
mBottomHaloNodes : Cylindrical2dMesh
mBoundaryElementIndices : Node< SPACE_DIM >
mBoundaryElementJacobianDeterminants : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryElements : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , NonlinearElasticitySolver< DIM >
mBoundaryElementsMapping : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryElementWeightedDirections : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryFaceData : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
mBoundaryFacesRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mBoundaryNodes : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryValue : PdeAndBoundaryConditions< DIM >
mBoxes : BoxCollection< DIM >
mBoxWidth : BoxCollection< DIM >
mC : Mirams2010WntOdeSystem
mc1 : Alarcon2004OxygenBasedCellCycleOdeSystem
mC1 : MooneyRivlinMaterialLaw< DIM >
mc2 : Alarcon2004OxygenBasedCellCycleOdeSystem
mC2 : MooneyRivlinMaterialLaw< DIM >
mCalcium50ref : NhsContractionModel
mCalciumI : NhsContractionModel
mCalciumTrop50 : NhsContractionModel
mCalciumTroponinMax : NhsContractionModel
mCallCount : MockEulerIvpOdeSolver
mCanDivide : Cell
mCellCount : AbstractCellProperty
mCellCyclePhaseCount : AbstractCellPopulation< DIM >
mCellDensityOnCoarseElements : AveragedSourcePde< DIM >
mCellHeterogeneityAreas : HeartConfigRelatedCellFactory< SPACE_DIM >
mCellId : Cell
mCellIter : AbstractCellPopulation< DIM >::Iterator
mCellKillers : CellBasedSimulation< DIM >
mCellLocationMap : AbstractCellPopulation< DIM >
mCellPdeElementMap : CellBasedSimulationWithPdes< DIM >
mCellPopulationContainsMesh : AbstractCellPopulation< DIM >
mCellProliferativeType : AbstractCellCycleModel
mCellProliferativeTypeCount : AbstractCellPopulation< DIM >
mCellProperties : CellPropertyRegistry
mCellPropertyCollection : Cell
mCellRearrangementRatio : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mCellRearrangementThreshold : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mCells : AbstractCellPopulation< DIM >
mCellsDistributed : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mCentre : ChasteEllipsoid< SPACE_DIM > , RadialSloughingCellKiller
mCheckedAndCommunicatedIfDirichletBcs : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mCheckForRoots : CvodeAdaptor
mCleanDirectory : Hdf5DataWriter
mCoarseElementsForFineElementCentroids : FineCoarseMeshPair< DIM >
mCoarseElementsForFineNodes : FineCoarseMeshPair< DIM >
mCoefficient : AveragedSourcePde< DIM > , CellwiseSourcePde< DIM > , SimpleUniformSourcePde< DIM >
mColour : AbstractCellMutationState , ApoptoticCellProperty , CellLabel
mComponentName : CellMLToSharedLibraryConverter
mConcentrated : ParallelColumnDataWriter
mConstantConductivities : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mConstantDataForTesting : CellwiseData< DIM >
mConstantFibreSheetDirections : AbstractCardiacMechanicsSolver< DIM >
mConstantInUSourceTerm : CellBasedSimulationWithPdesAssembler< DIM >
mConstantWntValueForTesting : WntConcentration< DIM >
mContractionModel : CardiacElectroMechanicsProblem< DIM >
mContractionModelOdeTimeStep : CardiacElectroMechanicsProblem< DIM >
mContractionModelSystems : AbstractCardiacMechanicsSolver< DIM >
mCoordinatesFileHeader : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mCounterOfPlateauDepolarisations : CellProperties
mCpuTime : GenericEventHandler< NUM_EVENTS, CONCRETE >
mCriticalHypoxicDuration : SimpleOxygenBasedCellCycleModel
mCryptLength : WntConcentration< DIM >
mCryptProjectionParameterA : WntConcentration< DIM >
mCryptProjectionParameterB : WntConcentration< DIM >
mCurrentCellCyclePhase : AbstractCellCycleModel
mCurrentElementFibreDirection : AbstractCardiacMechanicsSolver< DIM >
mCurrentHypoxiaOnsetTime : SimpleOxygenBasedCellCycleModel
mCurrentHypoxicDuration : SimpleOxygenBasedCellCycleModel
mCurrentSolution : AbstractNonlinearElasticitySolver< DIM > , PdeAndBoundaryConditions< DIM >
mCurrentSolutionOrGuessReplicated : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mCurrentTime : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractCardiacMechanicsSolver< DIM > , SimulationTime
mCurrentTimeStep : Hdf5DataWriter
mCycB_threshold : TysonNovak2001OdeSystem
mCycleLengths : CellProperties
mCylindrical : HoneycombMeshGenerator
mD : Mirams2010WntOdeSystem
md1 : Alarcon2004OxygenBasedCellCycleOdeSystem
md2 : Alarcon2004OxygenBasedCellCycleOdeSystem
mDa : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDampingConstantMutant : AbstractCellPopulation< DIM >
mDampingConstantNormal : AbstractCellPopulation< DIM >
mData : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 > , CvodeAdaptor , CellwiseData< DIM >
mDataFile : FibreReader< DIM >
mDataFilename : ColumnDataReader
mDataFixedDimensionSize : Hdf5DataWriter
mDatasetDims : Hdf5DataWriter
mDatasetId : Hdf5DataWriter
mDc : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDca : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDct : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDd : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDdx : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDeactivationVoltage : Kerchoffs2003ContractionModel
mDeathTime : Cell
mDefaultIonicModel : HeartConfigRelatedCellFactory< SPACE_DIM >
mDeformationGradientsForEachMechanicsElement : CardiacElectroMechanicsProblem< DIM >
mDeformationOutputDirectory : CardiacElectroMechanicsProblem< DIM >
mDeformedPosition : AbstractNonlinearElasticitySolver< DIM >
mDeleteCellPopulation : CellBasedSimulation< DIM >
mDeletedBoundaryElementIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM >
mDeletedElementIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mDeletedNodeIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM >
mDeleteMesh : MeshBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
mDeleteNodes : NodeBasedCellPopulation< DIM >
mDensity : AbstractNonlinearElasticitySolver< DIM >
mDerivedQuantities : OdeSolution
mDerivedQuantityNames : AbstractOdeSystemInformation
mDerivedQuantityUnits : AbstractOdeSystemInformation
mDestroyMatAndVec : LinearSystem
mDiffusionCoefficient : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mDimension : AbstractCellCycleModel
mDirAbsPath : ArchiveLocationInfo
mDirectory : OutputFileHandler , Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter
mDirichIterator : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mDirichletBoundaryConditionsVector : LinearSystem
mDirPath : MeshBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
mDistMapEndocardium : HeartGeometryInformation< SPACE_DIM >
mDistMapEpicardium : HeartGeometryInformation< SPACE_DIM >
mDistMapLeftVentricle : HeartGeometryInformation< SPACE_DIM >
mDistMapRightVentricle : HeartGeometryInformation< SPACE_DIM >
mDivideTime : AbstractOdeBasedCellCycleModel
mDLambdaDt : NhsContractionModel
mDoCacheReplication : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mDomainDepth : HoneycombMeshGenerator
mDomainSize : BoxCollection< DIM >
mDomainWidth : HoneycombMeshGenerator
mDoubleIncompleteOutputMatrix : Hdf5DataWriter
mDoublePermutation : Hdf5DataWriter
mDt : CellCycleModelOdeHandler , CellBasedSimulation< DIM > , VanLeeuwen2009WntSwatCellCycleOdeSystem , AbstractCardiacCell , NhsModelWithBackwardSolver , BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM > , TimeStepper , AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mDtInverse : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mDu : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDuration : RegularStimulus , SimpleStimulus
mDurationOfSimulation : SimulationTime
mDx : VanLeeuwen2009WntSwatCellCycleOdeSystem
mDy : VanLeeuwen2009WntSwatCellCycleOdeSystem
mE : Mirams2010WntOdeSystem
mEdgeIter : MeshBasedCellPopulation< DIM >::SpringIterator
mEdgesVisited : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mElectricallyUnactivated : Kerchoffs2003ContractionModel
mElectricsTimeStep : CardiacElectroMechanicsProblem< DIM >
mElementCounterForParallelMesh : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mElementData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementFileDataStart : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementFileHeader : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mElementFileReadBuffer : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementIndices : Node< SPACE_DIM >
mElementInverseJacobians : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementItemWidth : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementIter : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
mElementJacobianDeterminants : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementJacobians : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mElements : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >
mElementsContained : Box< DIM >
mElementsFile : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementsMapping : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementsRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementWeightedDirections : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElemIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mEnabled : GenericEventHandler< NUM_EVENTS, CONCRETE >
mEnd : TimeStepper
mEndoFraction : HeartConfig
mEndoSurface : HeartGeometryInformation< SPACE_DIM >
mEndTime : CardiacElectroMechanicsProblem< DIM > , Electrodes< DIM > , ProgressReporter , SimulationTime , CellBasedSimulation< DIM >
mEndTimeAndNumberOfTimeStepsSet : SimulationTime
mEofException : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mEpiFraction : HeartConfig
mEpiSurface : HeartGeometryInformation< SPACE_DIM >
mEpsilon : FitzHughNagumo1961OdeSystem , DiscreteSystemForceCalculator
mError : RungeKuttaFehlbergIvpOdeSolver
MeshNum : AbstractUntemplatedConvergenceTester
mEta : Alarcon2004OxygenBasedCellCycleOdeSystem
mExtracelluarColumnId : BidomainProblem< DIM >
mExtraVariablesId : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mF : Mirams2010WntOdeSystem
mFaceData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaceFileDataStart : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaceFileReadBuffer : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaceItemWidth : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaceRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaces : VertexElement< ELEMENT_DIM, SPACE_DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >
mFacesFile : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFacesRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mFactor : FactorModifier
mFibreFilePathNoExtension : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mFibreOrientationFile : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mFibreSheetDirectionsDefinedByQuadraturePoint : AbstractCardiacMechanicsSolver< DIM >
mFibreSheetDirectionsDefinedPerQuadraturePoint : CardiacElectroMechanicsProblem< DIM >
mFibreSheetDirectionsFile : CardiacElectroMechanicsProblem< DIM >
mFieldWidth : ColumnDataReader , ColumnDataWriter
mFileBaseName : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
mFileExtension : ColumnDataWriter
mFileFixedDimensionSize : Hdf5DataWriter
mFileId : Hdf5DataReader , Hdf5DataWriter
mFilename1 : NumericFileComparison
mFilename2 : NumericFileComparison
mFilePath : FibreReader< DIM >
mFileReader : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mFilesAreBinary : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >
mFilesBaseName : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mFileSet : LogFile
mFinalCounter : CmguiDeformedSolutionsWriter< DIM >
mFineMeshElementsAndWeights : FineCoarseMeshPair< DIM >
mFinishedRunningOdes : AbstractOdeBasedCellCycleModel
mFixedDimensionName : ColumnDataWriter
mFixedDimensionSize : ColumnDataWriter
mFixedDimensionUnits : ColumnDataWriter
mFixedExtracellularPotentialNodes : BidomainProblem< DIM > , AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mFixedNodeDisplacements : AbstractNonlinearElasticitySolver< DIM >
mFixedNodes : CardiacElectroMechanicsProblem< DIM > , AbstractNonlinearElasticitySolver< DIM >
mFlag : AbstractElement< ELEMENT_DIM, SPACE_DIM >
mForceCollection : DiscreteSystemForceCalculator , CellBasedSimulation< DIM >
mForceStrength : VertexCryptBoundaryForce< DIM >
mForceUseOfNumericalJacobian : BackwardEulerIvpOdeSolver
mFunction : FunctionalBoundaryCondition< SPACE_DIM >
mG1Duration : AbstractCellCycleModel
mG2Duration : AbstractCellCycleModel
mG2PhaseStartTime : AbstractOdeBasedCellCycleModel
mGamma : NhsContractionModel , FitzHughNagumo1961OdeSystem
mGeneration : AbstractSimpleGenerationBasedCellCycleModel
mGhostNodeIndices : HoneycombMeshGenerator
mGhostSpringStiffness : MeshBasedCellPopulationWithGhostNodes< DIM >
mGradients : CellwiseDataGradient< DIM >
mGroundSecondElectrode : Electrodes< DIM >
mGroupName : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mHaloNodeIndices : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mHaloNodes : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mHaloNodesMapping : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mHasBath : BidomainProblem< DIM >
mHasBegun : GenericEventHandler< NUM_EVENTS, CONCRETE >
mHasDefaultStimulusFromCellML : AbstractCardiacCellInterface
mHasDirichletBCs : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mHasPutVariable : ColumnDataWriter
mHasUnlimitedDimension : ColumnDataReader
mHi : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM > , DistributedVector , DistributedVector::Stripe , DistributedVector::Chunk , DistributedVectorFactory , Hdf5DataWriter , DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mHypothesis : VanLeeuwen2009WntSwatCellCycleOdeSystem
mHypoxicConcentration : SimpleOxygenBasedCellCycleModel
mIdentity : PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
mIExtracellularStimulus : BidomainAssembler< ELEMENT_DIM, SPACE_DIM >
mIIntracellularStimulus : BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM >
mIionic : BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM >
mIionicCacheReplicated : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mImageToLeftOriginalNodeMap : Cylindrical2dMesh
mImageToRightOriginalNodeMap : Cylindrical2dMesh
MIN_NEWTON_ABS_TOL : AbstractNonlinearElasticitySolver< DIM >
mIncludeWntChemotaxis : CryptProjectionForce
mIncompleteNodeIndices : Hdf5DataReader , Hdf5DataWriter
mIndex : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
mIndexEndo : HeartConfig
mIndexEpi : HeartConfig
mIndexFromZero : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mIndexIterator : Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator
mIndexMid : HeartConfig
mInfoFilename : ColumnDataReader
mInitialCondition : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mInitialConditions : AbstractOdeSystemInformation
mInitialiseCells : CellBasedSimulation< DIM >
mInitialised : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM > , GenericEventHandler< NUM_EVENTS, CONCRETE > , AbstractOdeSystemInformation
mInitialValues : CvodeAdaptor
mInitTime : LogFile
mIntracellularStimulusCacheReplicated : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mInUse : GenericEventHandler< NUM_EVENTS, CONCRETE >
mIonicModelRegions : HeartConfigRelatedCellFactory< SPACE_DIM >
mIonicModelsDefined : HeartConfigRelatedCellFactory< SPACE_DIM >
mIsActivated : Kerchoffs2003ContractionModel
mIsBoundaryNode : Node< SPACE_DIM >
mIsDataComplete : Hdf5DataReader , Hdf5DataWriter
mIsDead : Cell
mIsDeleted : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
mIsFixedDimensionSet : ColumnDataWriter , Hdf5DataWriter
mIsGhostNode : MeshBasedCellPopulationWithGhostNodes< DIM >
mIsInDefineMode : ColumnDataWriter , Hdf5DataWriter
mIsInternal : Node< SPACE_DIM >
mIsLabelled : Alarcon2004OxygenBasedCellCycleOdeSystem
mIsLogged : Cell
mIsNeumannBoundaryCondition : PdeAndBoundaryConditions< DIM >
mIsParallel : ParallelColumnDataWriter
mIsUnlimitedDimensionSet : Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter
mIsUsedInTissue : AbstractCardiacCellInterface
mIsWatchedLocation : CardiacElectroMechanicsProblem< DIM >
mJ11d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ12d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ13d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ15 : TysonNovak2001OdeSystem
mJ16 : TysonNovak2001OdeSystem
mJ3 : Alarcon2004OxygenBasedCellCycleOdeSystem , TysonNovak2001OdeSystem
mJ4 : Alarcon2004OxygenBasedCellCycleOdeSystem , TysonNovak2001OdeSystem
mJ5 : TysonNovak2001OdeSystem
mJ61d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ62d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ63d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ7 : TysonNovak2001OdeSystem
mJ8 : TysonNovak2001OdeSystem
mJacobian : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
mK : PoleZeroMaterialLaw< DIM >
mK1 : NhsContractionModel , TysonNovak2001OdeSystem
mk1 : RungeKuttaFehlbergIvpOdeSolver
mK10 : TysonNovak2001OdeSystem
mK11 : TysonNovak2001OdeSystem
mK12d : TysonNovak2001OdeSystem
mK12dd : TysonNovak2001OdeSystem
mK12ddd : TysonNovak2001OdeSystem
mK13 : TysonNovak2001OdeSystem
mK14 : TysonNovak2001OdeSystem
mK15d : TysonNovak2001OdeSystem
mK15dd : TysonNovak2001OdeSystem
mK16d : TysonNovak2001OdeSystem
mk16d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK16dd : TysonNovak2001OdeSystem
mK2 : NhsContractionModel
mk2 : RungeKuttaFehlbergIvpOdeSolver
mk23d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK2d : TysonNovak2001OdeSystem
mk2d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK2dd : TysonNovak2001OdeSystem
mK2ddd : TysonNovak2001OdeSystem
mk3 : RungeKuttaFehlbergIvpOdeSolver
mk34d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK3d : TysonNovak2001OdeSystem
mk3d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK3dd : TysonNovak2001OdeSystem
mk4 : RungeKuttaFehlbergIvpOdeSolver
mK4 : TysonNovak2001OdeSystem
mk43d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK4d : TysonNovak2001OdeSystem
mk5 : RungeKuttaFehlbergIvpOdeSolver
mK5d : TysonNovak2001OdeSystem
mK5dd : TysonNovak2001OdeSystem
mK6 : TysonNovak2001OdeSystem
mk6 : RungeKuttaFehlbergIvpOdeSolver
mk61d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK7 : TysonNovak2001OdeSystem
mK8 : TysonNovak2001OdeSystem
mK9 : TysonNovak2001OdeSystem
mKc : VanLeeuwen2009WntSwatCellCycleOdeSystem
mKd : VanLeeuwen2009WntSwatCellCycleOdeSystem
mKeq : TysonNovak2001OdeSystem
mKm1d : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mKon : NhsContractionModel
mkpd : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mKrefoff : NhsContractionModel
mKspAbsoluteTol : AbstractNonlinearElasticitySolver< DIM >
mKspIsSetup : LinearSystem
mKspSolver : LinearSystem
mKspType : LinearSystem
mKt : VanLeeuwen2009WntSwatCellCycleOdeSystem
mKZ : NhsContractionModel
mLambda : NhsContractionModel
mLastInternalStepSize : AbstractCvodeCell , CvodeAdaptor
mLastNeumannCondition : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mLastPercentage : ProgressReporter
mLastTime : CellCycleModelOdeHandler
mLayerForEachNode : HeartGeometryInformation< SPACE_DIM >
mLeftElectrodeArea : Electrodes< DIM >
mLeftImages : Cylindrical2dMesh
mLeftOriginals : Cylindrical2dMesh
mLeftPeriodicBoundaryElementIndices : Cylindrical2dMesh
mLengthSet : WntConcentration< DIM >
mLevel : LogFile
mLevels : RampedQuarterStimulusCellFactory< CELL, DIM >
mLhsMatrix : LinearSystem
mLinearInUCoeffInSourceTerm : CellBasedSimulationWithPdesAssembler< DIM >
mLinearSolverRelativeTolerance : SimpleNewtonNonlinearSolver
mListOfNodes : ChasteNodesList< SPACE_DIM >
mLo : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM > , DistributedVector , DistributedVector::Stripe , DistributedVector::Chunk , DistributedVectorFactory , Hdf5DataWriter , DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mLoadableModulePath : DynamicCellModelLoader
mLoadedFromArchive : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mLoaders : DynamicModelLoaderRegistry
mLocalBoxes : BoxCollection< DIM >
mLocation : ChastePoint< DIM > , Node< SPACE_DIM >
mLocationCellMap : AbstractCellPopulation< DIM >
mLocationsOfT1Swaps : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mLocationsOfT3Swaps : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mLowerCorner : ChasteCuboid< SPACE_DIM >
mLVSurface : HeartGeometryInformation< SPACE_DIM >
mMad : TysonNovak2001OdeSystem
mMagnitudeOfStimulus : RegularStimulus , SimpleStimulus
mMap : NodeMap , VertexElementMap
mMarkedSprings : MeshBasedCellPopulation< DIM >
mMassMatrix : MatrixBasedBidomainSolver< ELEMENT_DIM, SPACE_DIM > , MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
mMaterialLaws : AbstractNonlinearElasticitySolver< DIM >
mMatNullSpace : LinearSystem
mMatrixIsAssembled : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mMatrixIsConstant : LinearSystem , AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mMatrixToAssemble : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mMatureCellTargetArea : NagaiHondaForce< DIM >
mMaxCellId : Cell
mMaxFaceBdyMarker : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mMaxLoggingLevel : LogFile
mMaxNodeBdyMarker : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mMaxSpatialPositions : NodeBasedCellPopulation< DIM >
mMaxSteps : AbstractCvodeCell , CvodeAdaptor
mMaxTransitGenerations : AbstractSimpleGenerationBasedCellCycleModel
mMaxUpstrokeVelocities : CellProperties
mMDuration : AbstractCellCycleModel
mMechanicsCutOffLength : AbstractTwoBodyInteractionForce< DIM > , NodeBasedCellPopulation< DIM >
mMechanicsTimeStep : CardiacElectroMechanicsProblem< DIM >
mMeinekeDivisionRestingSpringLength : GeneralisedLinearSpringForce< DIM >
mMeinekeDivisionSeparation : AbstractCentreBasedCellPopulation< DIM >
mMeinekeSpringGrowthDuration : GeneralisedLinearSpringForce< DIM >
mMeinekeSpringStiffness : GeneralisedLinearSpringForce< DIM >
mMeshChangesDuringSimulation : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mMeshFileBaseName : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mMeshFilename : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , ArchiveLocationInfo , HoneycombMeshGenerator
mMeshIsHexahedral : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mMeshIsLinear : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mMeshUnarchived : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mMeshWidth : RampedQuarterStimulusCellFactory< CELL, DIM > , AbstractUntemplatedConvergenceTester , CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
mMessage : Exception
mMetisPartitioning : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mMidFraction : HeartConfig
mMinAndMaxValues : Box< DIM >
mMinimumGapDuration : AbstractCellCycleModel
mMinSpatialPositions : NodeBasedCellPopulation< DIM >
mModifiersMap : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
mMstar : Alarcon2004OxygenBasedCellCycleOdeSystem , TysonNovak2001OdeSystem
mMu : TysonNovak2001OdeSystem
mMutantMutantMultiplier : LinearSpringWithVariableSpringConstantsForce< DIM >
mN : NhsContractionModel , PolynomialMaterialLaw3d , TysonNovak2001OdeSystem
mNagaiHondaCellBoundaryAdhesionEnergyParameter : NagaiHondaForce< DIM >
mNagaiHondaCellCellAdhesionEnergyParameter : NagaiHondaForce< DIM >
mNagaiHondaDeformationEnergyParameter : NagaiHondaForce< DIM >
mNagaiHondaMembraneSurfaceEnergyParameter : NagaiHondaForce< DIM >
mNeedAdvanceAlongUnlimitedDimension : ColumnDataWriter
mNeedExtend : Hdf5DataWriter
mNextTime : AbstractCardiacMechanicsSolver< DIM > , TimeStepper
mNoBirth : CellBasedSimulation< DIM >
mNode3dLocationMap : CryptProjectionForce
mNodeALocalIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mNodeBLocalIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mNodeColumnId : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mNodeCounterForParallelMesh : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNodeData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodeFileDataStart : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodeFileReadBuffer : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodeItemWidth : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodeIter : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
mNodeMapCurrentIndex : VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNodePairs : NodeBasedCellPopulation< DIM >
mNodeRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodes : AbstractElement< ELEMENT_DIM, SPACE_DIM > , AbstractMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM >
mNodesContained : Box< DIM >
mNodesFile : VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesMapping : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mNodesPerBoundaryElement : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesPerElement : VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNodesPermutation : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mNodesRead : VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesToOutput : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mNoElectricsOutput : CardiacElectroMechanicsProblem< DIM >
mNoMechanoElectricFeedback : CardiacElectroMechanicsProblem< DIM >
mNonZerosUsed : LinearSystem
mNormalMutantMultiplier : LinearSpringWithVariableSpringConstantsForce< DIM >
mNotInMesh : FineCoarseMeshPair< DIM >
mNotInMeshNearestElementWeights : FineCoarseMeshPair< DIM >
mNr : NhsContractionModel
mNullSpaceCreated : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mNumberOfNodes : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mNumberOfStateVariables : AbstractParameterisedSystem< VECTOR >
mNumberOfSurfacesProvided : HeartGeometryInformation< SPACE_DIM >
mNumberOfTimeSteps : OdeSolution
mNumberOfVariables : CellwiseData< DIM >
mNumberOwned : Hdf5DataWriter
mNumberTimesteps : Hdf5DataReader
mNumBirths : CellBasedSimulation< DIM >
mNumBoundaryElements : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNumBoxesEachDirection : BoxCollection< DIM >
mNumCellLength : HoneycombMeshGenerator
mNumCellWidth : HoneycombMeshGenerator
mNumDeaths : CellBasedSimulation< DIM >
mNumDofs : AbstractNonlinearElasticitySolver< DIM >
mNumElecTimestepsPerMechTimestep : CardiacElectroMechanicsProblem< DIM >
mNumElementAttributes : VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumElementNodes : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumElements : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM > , QuadraturePointsGroup< DIM >
mNumericalJacobianEpsilon : BackwardEulerIvpOdeSolver
mNumFaceAttributes : VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumFaces : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumFixedDimensions : ColumnDataReader
mNumHalosPerProcess : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mNumItemsPerLine : FibreReader< DIM >
mNumLinesOfData : FibreReader< DIM >
mNumNewtonIterations : AbstractNonlinearElasticitySolver< DIM >
mNumNodeAttributes : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumNodes : VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM > , DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM > , AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNumNodesPerElement : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNumNodesToUse : CmguiDeformedSolutionsWriter< DIM >
mNumProcessors : PetscTools
mNumProcs : DistributedVectorFactory
mNumQuadPoints : GaussianQuadratureRule< ELEMENT_DIM > , AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
mNumQuadPointsPerElement : QuadraturePointsGroup< DIM >
mNumRadialIntervals : CellBasedSimulationWithPdes< DIM >
mNumTimeSteps : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mNumVariables : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > , ColumnDataReader
mNumVertices : QuadraticMesh< DIM >
mOdeSystems : CombinedOdeSystem
mOdeTimestep : AbstractCardiacMechanicsSolver< DIM >
mOffset : DistributedVector::Chunk , Hdf5DataWriter
mOffsets : CombinedOdeSystem
mOneDimBoundary : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mOnlyAssembleOnSurfaceElements : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mOnsets : CellProperties
mOption : NonPhysiologicalContractionModel
mOrderingHasBeenSpecified : CellPropertyRegistry
mOrderOfBoundaryElements : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mOrderOfElements : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mOrientations : VertexElement< ELEMENT_DIM, SPACE_DIM >
mOutputCellAges : AbstractCellPopulation< DIM >
mOutputCellAncestors : AbstractCellPopulation< DIM >
mOutputCellCyclePhases : AbstractCellPopulation< DIM >
mOutputCellIdData : AbstractCellPopulation< DIM >
mOutputCellMutationStates : AbstractCellPopulation< DIM >
mOutputCellPopulationVolumes : MeshBasedCellPopulation< DIM >
mOutputCellProliferativeTypes : AbstractCellPopulation< DIM >
mOutputCellVariables : AbstractCellPopulation< DIM >
mOutputCellVolumes : AbstractCellPopulation< DIM >
mOutputDirectory : AbstractNonlinearElasticitySolver< DIM > , CardiacElectroMechanicsProblem< DIM > , ExecutableSupport , CellBasedSimulation< DIM >
mOutputFileHandler : ColumnDataWriter
mOutputNodeVelocities : CellBasedSimulation< DIM >
mOutputVoronoiData : MeshBasedCellPopulation< DIM >
mOwnership : AbstractElement< ELEMENT_DIM, SPACE_DIM >
mOwnershipRangeHi : LinearSystem , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mOwnershipRangeLo : LinearSystem , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mOxygenConcentration : Alarcon2004OxygenBasedCellCycleOdeSystem
mParameterNames : AbstractOdeSystemInformation
mParameters : AbstractParameterisedSystem< VECTOR >
mParameterSettings : HeartConfigRelatedCellFactory< SPACE_DIM >
mParameterUnits : AbstractOdeSystemInformation
mpArchive : ProcessSpecificArchive< Archive >
mpAverageRadialPdeSolutionResultsFile : CellBasedSimulationWithPdes< DIM >
mpBathNodes : LinearSystem
mpBidomainAssembler : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mpBidomainTissue : BidomainProblem< DIM > , AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , BidomainAssembler< ELEMENT_DIM, SPACE_DIM >
mpBlockDiagonalPC : LinearSystem
mpBodyForceFunction : AbstractNonlinearElasticitySolver< DIM >
mpBoundaryConditions : AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM > , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mpBoundaryConditionsContainer : Electrodes< DIM > , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpBoundaryQuadratureRule : NonlinearElasticitySolver< DIM >
mpBoxCollection : NodeBasedCellPopulation< DIM >
mPc : VanLeeuwen2009WntSwatCellCycleOdeSystem
mpCalculator : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM >
mpCardiacMechSolver : CardiacElectroMechanicsProblem< DIM >
mpCardiacTissue : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mPCContext : PCBlockDiagonal , PCLDUFactorisation , PCTwoLevelsBlockDiagonal
mpCell : AbstractCellCycleModel
mpCellAgesFile : AbstractCellPopulation< DIM >
mpCellCycleModel : Cell
mpCellCyclePhasesFile : AbstractCellPopulation< DIM >
mpCellFactory : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpCellIdFile : AbstractCellPopulation< DIM >
mpCellMutationStatesFile : AbstractCellPopulation< DIM >
mpCellPopulation : CellwiseData< DIM > , AbstractCellKiller< SPACE_DIM > , WntConcentration< DIM >
mpCellPopulationVolumesFile : MeshBasedCellPopulation< DIM >
mpCellProliferativeTypesFile : AbstractCellPopulation< DIM >
mpCellPropertyRegistry : AbstractCellPopulation< DIM > , CellPropertyCollection
mpCellVariablesFile : AbstractCellPopulation< DIM >
mpCellVolumesFile : MeshBasedCellPopulation< DIM >
mpChangeOfBasisMatrix : PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
mpCoarseMeshBoxCollection : FineCoarseMeshPair< DIM >
mpCoarsePdeMesh : CellBasedSimulationWithPdes< DIM >
mpCommonArchive : ArchiveOpener< Archive, Stream >
mpCommonStream : ArchiveOpener< Archive, Stream >
mpConfig : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mpCreationFunction : DynamicCellModelLoader
mPcType : LinearSystem
mpCurrentAncillaryFile : ColumnDataWriter
mpCurrentElementFibreSheetMatrix : AbstractCardiacMechanicsSolver< DIM >
mpCurrentOutputFile : ColumnDataWriter
mpCvodeMem : AbstractCvodeCell , CvodeAdaptor
mpData : ReplicatableVector
mpDataReader : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM > , PropagationPropertiesCalculator , PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mPdeAndBcCollection : CellBasedSimulationWithPdes< DIM >
mpDefaultBoundaryConditionsContainer : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpDefaultParameters : HeartConfig
mpDelaunayMesh : VertexMesh< ELEMENT_DIM, SPACE_DIM >
mpDirichletMap : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpDistributedVectorFactory : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > , AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mpDynamicModule : DynamicCellModelLoader
mPeakValues : CellProperties
mpElectricsMesh : CardiacElectroMechanicsProblem< DIM >
mpElectrodes : BidomainProblem< DIM >
mpElementIterator : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mpEllipticPde : SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
mPeriod : RegularStimulus
mPetscIsInitialised : PetscTools
mPetscPCObject : PCBlockDiagonal , PCTwoLevelsBlockDiagonal , PCLDUFactorisation
mPetscStatusKnown : DistributedVectorFactory
mpExtracellularConductivityTensors : BidomainTissue< SPACE_DIM >
mpFaceIterator : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mpFactory : DistributedVector , DistributedVector::Stripe
mpFile : ProgressReporter
mpFile1 : NumericFileComparison
mpFile2 : NumericFileComparison
mpFineMeshBoxCollection : FineCoarseMeshPair< DIM >
mpFixedDimensionVariable : ColumnDataWriter
mpGeometryInfo : StreeterFibreGenerator< SPACE_DIM >
mpHeartGeometryInformation : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
mphi_i : WntCellCycleOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem
mphi_j : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mphi_p : WntCellCycleOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem
mphi_r : VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mPhiE2F1 : WntCellCycleOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem
mpInstance : CommandLineArguments , WntConcentration< DIM > , CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > , RandomNumberGenerator , DynamicModelLoaderRegistry , HeartConfig , SimulationTime , Warnings , CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > , OdeSystemInformation< ODE_SYSTEM > , CellPropertyRegistry , LogFile , CellwiseData< DIM >
mpIntracellularConductivityTensors : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
mpIntracellularStimulus : AbstractCardiacCellInterface
mpIters : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpLDUFactorisationPC : LinearSystem
mpLinearSystem : AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractNonlinearElasticitySolver< DIM >
mpLoader : AbstractDynamicallyLoadableEntity
mpMechanicsMesh : CardiacElectroMechanicsProblem< DIM >
mpMesh : HoneycombMeshGenerator , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , HeartGeometryInformation< SPACE_DIM > , AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > , AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM > , HoneycombVertexMeshGenerator , VertexMeshWriter< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > , Electrodes< DIM >
mpMeshPair : CardiacElectroMechanicsProblem< DIM >
mpMeshReader : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM > , GenericMeshReader< ELEMENT_DIM, SPACE_DIM >
mpMonodomainAssembler : AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
mpMonodomainProblem : CardiacElectroMechanicsProblem< DIM >
mpMonodomainTissue : AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
mpMutationState : Mirams2010WntOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mpNeumannMap : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpNodeIterator : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mpNodeMap : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpNodeVelocitiesFile : CellBasedSimulation< DIM >
mpNonConstantConductivities : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mpNonlinearEllipticPde : SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
mpOdeSolver : AbstractCardiacCellInterface , CellCycleModelOdeHandler , AbstractCellCycleModelOdeSolver
mpOdeSystem : CellCycleModelOdeHandler
mpOdeSystemInformation : OdeSolution
mPoints : GaussianQuadratureRule< ELEMENT_DIM >
mPopCounter : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mpOriginalFactory : DistributedVectorFactory
mpOutputFileHandler : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM > , AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
mpOutStream : LogFile
mpParabolicPde : SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
mpParallelMesh : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpPde : PdeAndBoundaryConditions< DIM >
mpPreconditionMatrixLinearSystem : AbstractNonlinearElasticitySolver< DIM >
mpPrivateArchive : ArchiveOpener< Archive, Stream >
mpPrivateStream : ArchiveOpener< Archive, Stream >
mpQuadMesh : NonlinearElasticitySolver< DIM >
mpQuadraticMesh : CmguiDeformedSolutionsWriter< DIM >
mpQuadratureRule : NonlinearElasticitySolver< DIM >
mpQuadRule : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mpRandomGenerator : CellBasedSimulation< DIM >
mpReader : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
mPrecision : LogFile , ColumnDataWriter
mPressures : AbstractNonlinearElasticitySolver< DIM >
mPrintOutput : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mProbabilityOfDeathInAnHour : RandomCellKiller< DIM >
mProbeElectrode : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mProblemSize : DistributedVectorFactory , DistributedVector
mProperties : CellPropertyCollection
mpSolver : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > , BidomainProblem< DIM > , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpStaticCastCellPopulation : CryptSimulation1d , CryptSimulation2d
mpStimuli : RampedQuarterStimulusCellFactory< CELL, DIM >
mpStimulus : BathCellFactory< DIM, CELLTYPE > , PlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM > , StimulusBoundaryCondition< SPACE_DIM >
mpSurfaceQuadRule : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mpSystemInfo : AbstractParameterisedSystem< VECTOR >
mpT1SwapLocationsFile : VertexBasedCellPopulation< DIM >
mpT3SwapLocationsFile : VertexBasedCellPopulation< DIM >
mpTractionBoundaryConditionFunction : AbstractNonlinearElasticitySolver< DIM >
mpTwoLevelsBlockDiagonalPC : LinearSystem
mPu : VanLeeuwen2009WntSwatCellCycleOdeSystem
mpUnlimitedDimensionVariable : ColumnDataWriter
mpUserParameters : HeartConfig
mpVariableFibreSheetDirections : AbstractCardiacMechanicsSolver< DIM >
mpVec : DistributedVector::Stripe , DistributedVector::Chunk , DistributedVector
mpVizBoundaryNodesFile : AbstractCellPopulation< DIM >
mpVizCellAncestorsFile : AbstractCellPopulation< DIM >
mpVizCellProliferativeTypesFile : AbstractCellPopulation< DIM >
mpVizElementsFile : MeshBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
mpVizNodesFile : AbstractCellPopulation< DIM >
mpVizPdeSolutionResultsFile : CellBasedSimulationWithPdes< DIM >
mpVizSetupFile : CellBasedSimulation< DIM >
mpVizStressResultsFile : DiscreteSystemForceCalculator
mpVoronoiFile : MeshBasedCellPopulation< DIM >
mpVoronoiTessellation : MeshBasedCellPopulation< DIM >
mpVtkGeometryFilter : VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mpVtkMetaFile : VertexBasedCellPopulation< DIM > , MeshBasedCellPopulation< DIM >
mpVtkUnstructedMesh : VertexMeshWriter< ELEMENT_DIM, SPACE_DIM > , VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpVtkUnstructuredGrid : VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mpWatchedLocationFile : CardiacElectroMechanicsProblem< DIM >
mpWriter : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpZeroBoundaryCondition : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpZeroStimulus : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
mQueue : OutputDirectoryFifoQueue
mQueueMaxSize : OutputDirectoryFifoQueue
mQuiescentConcentration : SimpleOxygenBasedCellCycleModel
mRadii : ChasteEllipsoid< SPACE_DIM >
mRadius : RadialSloughingCellKiller
mRadiusVectors : PapillaryFibreCalculator
mRank : PetscTools
mrCellPopulation : CellwiseSourcePde< DIM > , CellBasedSimulation< DIM > , MeshBasedCellPopulation< DIM >::SpringIterator , AveragedSourcePde< DIM > , DiscreteSystemForceCalculator , AbstractCellPopulation< DIM >::Iterator
mrCoarseMesh : FineCoarseMeshPair< DIM >
mrCrypt : AbstractCryptStatistics
mReadContainingElementOfBoundaryElement : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mReadyToDivide : AbstractCellCycleModel
mRegion : Node< SPACE_DIM > , AbstractElement< ELEMENT_DIM, SPACE_DIM >
mRegionNames : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mRelTol : CvodeAdaptor , AbstractCvodeCell
mReordering : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
mReplicated : ReplicatableVector
mResidual : BackwardEulerIvpOdeSolver , CardiacNewtonSolver< SIZE >
mRestingValues : CellProperties
mrFineMesh : FineCoarseMeshPair< DIM >
mRhsVector : LinearSystem
mRightElectrodeArea : Electrodes< DIM >
mRightImages : Cylindrical2dMesh
mRightOriginals : Cylindrical2dMesh
mRightPeriodicBoundaryElementIndices : Cylindrical2dMesh
mrMesh : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM > , PapillaryFibreCalculator , PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , VertexBasedCellPopulation< DIM > , StreeterFibreGenerator< SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM > , MeshBasedCellPopulation< DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
mRoundCounter : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mRowForAverageOfPhiZeroed : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , BidomainProblem< DIM >
mRowStartPosition : ColumnDataWriter
mRowWidth : ColumnDataWriter
mrTime : CellProperties
mrVectorFactory : Hdf5DataWriter
mrVoltage : CellProperties
mRVSurface : HeartGeometryInformation< SPACE_DIM >
mSa : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSamplingTimestepMultiple : CellBasedSimulation< DIM >
mSarcomereLength : Kerchoffs2003ContractionModel
mSavedProblem : CardiacSimulation
mSaveProblemInstance : CardiacSimulation
mSc : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSca : VanLeeuwen2009WntSwatCellCycleOdeSystem
mScaledVoltage : Nash2004ContractionModel
mScaleFactor : MassMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
mScaleFactorGkr : HeartConfigRelatedCellFactory< SPACE_DIM >
mScaleFactorGks : HeartConfigRelatedCellFactory< SPACE_DIM >
mScaleFactorIto : HeartConfigRelatedCellFactory< SPACE_DIM >
msCheckNumberOfProcessesOnLoad : DistributedVectorFactory
mSchemaLocations : HeartConfig
mSct : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSd : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSDuration : AbstractCellCycleModel
mSeed : RandomNumberGenerator
mSetVoltageDerivativeToZero : AbstractCardiacCellInterface
msFakePath : FileFinder
msFakeWhat : FileFinder
msFaking : FileFinder
mShortMessage : Exception
mSimulationOutputDirectory : CellBasedSimulation< DIM >
mSingleIncompleteOutputMatrix : Hdf5DataWriter
mSinglePermutation : Hdf5DataWriter
mSingleTarget : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
msInstances : CombinedOdeSystemInformation
mSize : ReplicatableVector , LinearSystem
mSizeMultiplier : DistributedVector
mSizeOfOdeSystem : AbstractCellCycleModelOdeSolver , BackwardEulerIvpOdeSolver
mSkipDeletedElements : VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
mSkipDeletedNodes : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
mSloughHeight : SloughingCellKiller< DIM >
mSloughSides : SloughingCellKiller< DIM >
mSloughWidth : SloughingCellKiller< DIM >
mSmoothedStructureTensors : PapillaryFibreCalculator
mSolution : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mSolutionReplicated : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mSolutions : OdeSolution
mSpringsVisited : MeshBasedCellPopulation< DIM >::SpringIterator
mSt : VanLeeuwen2009WntSwatCellCycleOdeSystem
mStart : TimeStepper
mStartOfApoptosisTime : Cell
mStartTime : RegularStimulus , Electrodes< DIM > , SimulationTime , ProgressReporter
mStartTimeSet : SimulationTime
mStateVariables : AbstractParameterisedSystem< VECTOR >
mStatisticsCounters : FineCoarseMeshPair< DIM >
mStemCellG1Duration : AbstractCellCycleModel
mStepSize : RampedQuarterStimulusCellFactory< CELL, DIM >
mStimulatedAreas : HeartConfigRelatedCellFactory< SPACE_DIM >
mStimulatedPoint : BathCellFactory< DIM, CELLTYPE >
mStimuli : MultiStimulus
mStimuliApplied : HeartConfigRelatedCellFactory< SPACE_DIM >
mStochasticG2Duration : StochasticOxygenBasedCellCycleModel , StochasticWntCellCycleModel
mStoppingEventOccurred : AbstractIvpOdeSolver
mStoppingTime : AbstractIvpOdeSolver
mStopTime : RegularStimulus
mStretch : CML_noble_varghese_kohl_noble_1998_basic_with_sac , NonPhysiologicalContractionModel
mStretches : AbstractCardiacMechanicsSolver< DIM >
mStretchesForEachMechanicsElement : CardiacElectroMechanicsProblem< DIM >
mStretchesLastTimeStep : ImplicitCardiacMechanicsSolver< DIM >
mStride : DistributedVector::Stripe
mStripe : DistributedVector::Stripe
mStructureTensors : PapillaryFibreCalculator
mSurfaceTractions : AbstractNonlinearElasticitySolver< DIM >
mSx : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSy : VanLeeuwen2009WntSwatCellCycleOdeSystem
mSystemName : AbstractOdeSystemInformation
mT2Threshold : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
mTargetIndex : TargetedCellKiller< DIM >
mTargetNodeIndex : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mTargetNodePoint : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mTemporaryStateVariables : AbstractOdeBasedContractionModel
mTend : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTensors : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mTestDampingValues : SimpleNewtonNonlinearSolver
mThreshold : CellProperties
mTime : AbstractAlgebraicContractionModel , PdeSimulationTime , TimeStepper , AbstractOdeBasedContractionModel
mTimeColumnId : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTimeDatasetId : Hdf5DataWriter , Hdf5DataReader
mTimeOfStimulus : SimpleStimulus
mTimes : OdeSolution
mTimesAtMaxUpstrokeVelocity : CellProperties
mTimesCalled : RandomNumberGenerator
mTimeSpentInG1Phase : SimpleOxygenBasedCellCycleModel
mTimesSet : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTimeStepsElapsed : SimulationTime
mToAll : ReplicatableVector
mTokens : FibreReader< DIM >
mTolerance : NhsModelWithBackwardSolver , SimpleNewtonNonlinearSolver , LinearSystem
mToMaster : ParallelColumnDataWriter
mTop : HoneycombMeshGenerator , Cylindrical2dMesh
mTopHaloNodes : Cylindrical2dMesh
mTotalNumBoundaryElements : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalNumElements : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalNumNodes : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalQuadPoints : AbstractCardiacMechanicsSolver< DIM >
mTotalTimeStepsInSimulation : SimulationTime
mTotalTimeStepsTaken : TimeStepper
mTransitCellG1Duration : AbstractCellCycleModel
mTref : NhsContractionModel
mTstart : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTypeSet : WntConcentration< DIM >
mUndergoingApoptosis : Cell
mUnfinishedActionPotentials : CellProperties
mUnlimitedDimensionName : Hdf5DataWriter , ColumnDataWriter
mUnlimitedDimensionPosition : ColumnDataWriter
mUnlimitedDimensionUnit : Hdf5DataWriter
mUnlimitedDimensionUnits : ColumnDataWriter
mUpdate : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
mUpdateCellPopulation : CellBasedSimulation< DIM >
mUpperCorner : ChasteCuboid< SPACE_DIM >
mUseAbsoluteTolerance : LinearSystem
mUseAnalyticalJacobian : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mUseAnalyticJacobian : AbstractOdeSystem
mUseApoptoticSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseAreaBasedDampingConstant : MeshBasedCellPopulation< DIM >
mUseBCatSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseCellProliferativeTypeDependentG1Duration : SimpleWntCellCycleModel
mUseConstantDataForTesting : CellwiseData< DIM >
mUseConstantWntValueForTesting : WntConcentration< DIM >
mUseCutOffLength : AbstractTwoBodyInteractionForce< DIM >
mUseEdgeBasedSpringConstant : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseFibreOrientation : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mUseFixedSchemaLocation : HeartConfig
mUseJiggledBottomCells : CryptSimulation2d , VertexCryptSimulation2d
mUseMatrixBasedRhsAssembly : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mUseMatrixForIncompleteData : Hdf5DataWriter
mUseMutantSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseNonConstantConductivities : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
mUserAskedForCellularTransmuralHeterogeneities : HeartConfig
mUserAskedForCuboidsForCellularHeterogeneities : HeartConfig
mUsingBodyForceFunction : AbstractNonlinearElasticitySolver< DIM >
mUsingTractionBoundaryConditionFunction : AbstractNonlinearElasticitySolver< DIM >
mValue : FixedModifier , ConstBoundaryCondition< SPACE_DIM >
mValues : ColumnDataReader
mVariableName : DataWriterVariable , PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mVariableNames : Hdf5DataReader , AbstractOdeSystemInformation
mVariableParameterMaps : CombinedOdeSystem
mVariables : ColumnDataWriter , Hdf5DataWriter
mVariablesDatasetId : Hdf5DataReader
mVariablesDatasetRank : Hdf5DataReader
mVariablesDatasetSizes : Hdf5DataReader
mVariablesToColumns : ColumnDataReader
mVariablesToUnits : ColumnDataReader
mVariableToColumnIndex : Hdf5DataReader
mVariableToUnit : Hdf5DataReader
mVariableUnits : AbstractOdeSystemInformation , DataWriterVariable
mVariesWithFixedDimension : DataWriterVariable
mVariesWithUnlimitedDimension : DataWriterVariable
mVec : DistributedVector
mVecForConstructingRhs : MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM > , MatrixBasedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
mVectorToAssemble : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mVizBetaCateninResultsFile : VertexCryptSimulation2d , CryptSimulation2d
mVoltageColumnId : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mVoltageIndex : AbstractCardiacCellInterface
mVoltageName : PropagationPropertiesCalculator
mVoronoiElementIndexMap : VertexMesh< ELEMENT_DIM, SPACE_DIM >
mVtuFile : VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
mWarningMessages : Warnings
mWatchedElectricsNodeIndex : CardiacElectroMechanicsProblem< DIM >
mWatchedLocation : CardiacElectroMechanicsProblem< DIM >
mWatchedMechanicsNodeIndex : CardiacElectroMechanicsProblem< DIM >
mWeAllocatedSolverMemory : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mWeights : GaussianQuadratureRule< ELEMENT_DIM >
mWelikyOsterAreaParameter : WelikyOsterForce< DIM >
mWelikyOsterPerimeterParameter : WelikyOsterForce< DIM >
mWidth : Cylindrical2dVertexMesh , Cylindrical2dMesh
mWntChemotaxisStrength : CryptProjectionForce
mWntConcentrationParameter : WntConcentration< DIM >
mWntLabelledThreshold : SimpleWntCellCycleModel
mWntLevel : WntCellCycleOdeSystem , Mirams2010WntOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem
mWntStemThreshold : SimpleWntCellCycleModel
mWntTransitThreshold : SimpleWntCellCycleModel
mWntType : WntConcentration< DIM >
mWorkingDerivs : CombinedOdeSystem
mWorkingMemory : AbstractOneStepIvpOdeSolver
mWorkingStateVars : CombinedOdeSystem
mWorkOnEntireMesh : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
mWriteAverageRadialPdeSolution : CellBasedSimulationWithPdes< DIM >
mWriteBetaCatenin : VertexCryptSimulation2d , CryptSimulation2d
mWriteDailyAverageRadialPdeSolution : CellBasedSimulationWithPdes< DIM >
mWriteInfo : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mWriteMetaFile : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mWriteOutput : AbstractNonlinearElasticitySolver< DIM > , CardiacElectroMechanicsProblem< DIM >
mWriteStats : SimpleNewtonNonlinearSolver
mXiC : VanLeeuwen2009WntSwatCellCycleOdeSystem
mXiD : VanLeeuwen2009WntSwatCellCycleOdeSystem
mXiDx : VanLeeuwen2009WntSwatCellCycleOdeSystem
mXiX : VanLeeuwen2009WntSwatCellCycleOdeSystem
mxThreshold : Alarcon2004OxygenBasedCellCycleOdeSystem
myk2 : RungeKuttaFehlbergIvpOdeSolver
myk3 : RungeKuttaFehlbergIvpOdeSolver
myk4 : RungeKuttaFehlbergIvpOdeSolver
myk5 : RungeKuttaFehlbergIvpOdeSolver
myk6 : RungeKuttaFehlbergIvpOdeSolver
myThreshold : Alarcon2004OxygenBasedCellCycleOdeSystem
mZeroVectorBeforeAssembly : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
mZp : NhsContractionModel