- r -

• RadialSloughingCellKiller() : RadialSloughingCellKiller
• RampedQuarterStimulusCellFactory() : RampedQuarterStimulusCellFactory< CELL, DIM >
• randMod() : RandomNumberGenerator
• RandomCellKiller() : RandomCellKiller< DIM >
• RandomNumberGenerator() : RandomNumberGenerator
• ranf() : RandomNumberGenerator
• rCacheVoltages() : PropagationPropertiesCalculator
• ReadColumnFromFile() : ColumnDataReader
• ReadFile() : HeartConfig
• ReadFileToDomDocument() : XmlTools
• ReadHeaders() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
• ReadNodesPerProcessorFile() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ReadNumLinesOfDataFromFile() : FibreReader< DIM >
• ReadParametersFromFile() : CardiacSimulation
• ReadPetscObject() : PetscTools
• ReadValueFromFile() : ColumnDataReader
• ReadXmlFile() : XmlTools
• ReadyToDivide() : Cell , AbstractCellCycleModel
• ReallocateMemory() : CellwiseData< DIM >
• ReconstructCylindricalMesh() : Cylindrical2dMesh
• RefineElement() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• RefreshJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• RefreshJacobianCachedData() : NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RefreshMesh() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegenerateTables() : AbstractLookupTableCollection
• RegisterBoundaryElement() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterCableElement() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterElement() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterHaloNode() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterNode() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterWithNodes() : AbstractElement< ELEMENT_DIM, SPACE_DIM > , BoundaryElement< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM > , VertexElement< ELEMENT_DIM, SPACE_DIM > , VertexElement< 1, SPACE_DIM >
• RegularStimulus() : RegularStimulus
• RegularStimulusZeroNetCharge() : RegularStimulusZeroNetCharge
• ReIndex() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• ReMesh() : MutableMesh< ELEMENT_DIM, SPACE_DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , Cylindrical2dMesh , NodesOnlyMesh< SPACE_DIM >
• RemoveArray() : AdaptiveTetrahedralMesh
• RemoveBoundaryElement() : Node< SPACE_DIM >
• RemoveCellProperty() : Cell
• RemoveDeadCells() : AbstractCellPopulation< DIM > , MeshBasedCellPopulation< DIM > , NodeBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
• RemoveDeletedNodes() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• RemoveDeletedNodesAndElements() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• RemoveElement() : Node< SPACE_DIM >
• RemoveNode() : Box< DIM >
• RemoveNullSpace() : LinearSystem
• RemovePetscContext() : ReplicatableVector
• RemoveProperty() : CellPropertyCollection
• ReorderNodes() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ReplaceNode() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• ReplicatableVector() : ReplicatableVector
• Replicate() : ReplicatableVector
• ReplicateBool() : PetscTools
• ReplicateCaches() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• ReplicateException() : PetscTools
• ReplicatePetscVector() : ReplicatableVector
• Report() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ReportImpl() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• RescaleMeshFromBoundaryNode() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• Reseed() : RandomNumberGenerator
• Reset() : AdaptiveTetrahedralMesh , HeartConfig , GenericEventHandler< NUM_EVENTS, CONCRETE > , Timer , AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > , GenericMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractCellCycleModelOdeSolver , CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
• ResetBoundaryConditionsContainer() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• ResetCache() : PetscTools
• ResetDirichletCommunication() : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ResetEndTimeAndNumberOfTimeSteps() : SimulationTime
• ResetForDivision() : AbstractCellCycleModel , AbstractOdeBasedCellCycleModel , AbstractSimpleCellCycleModel , AbstractSimpleGenerationBasedCellCycleModel , Alarcon2004OxygenBasedCellCycleModel , StochasticOxygenBasedCellCycleModel , TysonNovakCellCycleModel , AbstractWntOdeBasedCellCycleModel , StochasticWntCellCycleModel
• ResetImpl() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ResetIndex() : BoundaryElement< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM > , VertexElement< ELEMENT_DIM, SPACE_DIM > , VertexElement< 1, SPACE_DIM >
• ResetInterpolatedQuantities() : AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , CellBasedSimulationWithPdesAssembler< DIM >
• ResetKspSolver() : LinearSystem
• ResetMaxCellId() : Cell
• ResetStatisticsVariables() : FineCoarseMeshPair< DIM >
• ResetTimeStep() : TimeStepper
• ResetToIdentity() : NodeMap , VertexElementMap
• ResetToInitialConditions() : AbstractParameterisedSystem< VECTOR >
• ResetToNoChangeOfBasisMatrix() : AbstractMaterialLaw< DIM >
• Resize() : ReplicatableVector , NodeMap , VertexElementMap
• Restore() : DistributedVector
• rGetAllCellProperties() : CellPropertyRegistry
• rGetBathIdentifiers() : HeartConfig
• rGetBox() : BoxCollection< DIM >
• rGetCellCyclePhaseCount() : AbstractCellPopulation< DIM >
• rGetCellPopulation() : CellwiseData< DIM > , CellBasedSimulation< DIM >
• rGetCellProliferativeTypeCount() : AbstractCellPopulation< DIM >
• rGetCellPropertyCollection() : Cell
• rGetCells() : AbstractCellPopulation< DIM >
• rGetCellsDistributed() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetCentre() : ChasteEllipsoid< SPACE_DIM >
• rGetCoarseElementsForFineElementCentroids() : FineCoarseMeshPair< DIM >
• rGetCoarseElementsForFineNodes() : FineCoarseMeshPair< DIM >
• rGetConstStateVariables() : AbstractOdeSystem
• rGetContainingBoundaryElementIndices() : Node< SPACE_DIM >
• rGetContainingElementIndices() : Node< SPACE_DIM >
• rGetCurrentSolution() : AbstractNonlinearElasticitySolver< DIM >
• rGetData() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• rGetDeformedPosition() : CardiacElectroMechanicsProblem< DIM > , AbstractNonlinearElasticitySolver< DIM >
• rGetDerivedQuantities() : OdeSolution
• rGetDerivedQuantityNames() : AbstractOdeSystemInformation , AbstractParameterisedSystem< VECTOR >
• rGetDerivedQuantityUnits() : AbstractOdeSystemInformation , AbstractParameterisedSystem< VECTOR >
• rGetDirichletBoundaryConditionsVector() : LinearSystem
• rGetDistanceMapEndocardium() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapEpicardium() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapLeftVentricle() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapRightVentricle() : HeartGeometryInformation< SPACE_DIM >
• rGetElementsAndWeights() : FineCoarseMeshPair< DIM >
• rGetElementsContained() : Box< DIM >
• rGetExtracellularConductivityTensor() : BidomainTissue< SPACE_DIM > , AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetFibreStretches() : ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
• rGetForceVector() : OdeLinearSystemSolver
• rGetGhostNodes() : MeshBasedCellPopulationWithGhostNodes< DIM >
• rGetGlobalLows() : DistributedVectorFactory
• rGetGradient() : CellwiseDataGradient< DIM >
• rGetIionicCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetIntracellularConductivityTensor() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetIntracellularStimulusCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetLayerForEachNode() : HeartGeometryInformation< SPACE_DIM >
• rGetLhsMatrix() : OdeLinearSystemSolver , LinearSystem
• rGetLocation() : ChastePoint< DIM > , Node< SPACE_DIM >
• rGetLowerCorner() : ChasteCuboid< SPACE_DIM >
• rGetMesh() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , MeshBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM > , MeshBasedCellPopulation< DIM > , NodeBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
• rGetMinAndMaxValues() : Box< DIM >
• rGetModifiableLocation() : Node< SPACE_DIM >
• rGetModifiedConductivityTensor() : CardiacElectroMechanicsProblem< DIM > , AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
• rGetNodeAttributes() : Node< SPACE_DIM >
• rGetNodePairs() : NodeBasedCellPopulation< DIM >
• rGetNodePermutation() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• rGetNodes() : NodeBasedCellPopulation< DIM >
• rGetNodesContained() : Box< DIM >
• rGetNodesList() : ChasteNodesList< SPACE_DIM >
• rGetNodesOnEndoSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnEpiSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnLVSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnRVSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNormalToPlane() : PlaneBasedCellKiller< DIM > , PlaneBoundaryCondition< DIM >
• rGetParameterNames() : AbstractOdeSystemInformation , AbstractParameterisedSystem< VECTOR >
• rGetParameters() : OdeSolution
• rGetParameterUnits() : AbstractOdeSystemInformation , AbstractParameterisedSystem< VECTOR >
• rGetPdeSolution() : AbstractOdeSystemForCoupledPdeSystem
• rGetPointOnPlane() : PlaneBasedCellKiller< DIM > , PlaneBoundaryCondition< DIM >
• rGetPrecondMatrix() : LinearSystem
• rGetPressures() : NonlinearElasticitySolver< DIM >
• rGetQuadPoint() : GaussianQuadratureRule< ELEMENT_DIM >
• rGetRadii() : ChasteEllipsoid< SPACE_DIM >
• rGetRhsVector() : LinearSystem
• rGetSolutions() : OdeSolution
• rGetStateVariableNames() : AbstractParameterisedSystem< VECTOR > , AbstractOdeSystemInformation
• rGetStateVariables() : AbstractParameterisedSystem< VECTOR >
• rGetStateVariableUnits() : AbstractParameterisedSystem< VECTOR > , AbstractOdeSystemInformation
• rGetTimes() : OdeSolution
• rGetTissueIdentifiers() : HeartConfig
• rGetUpperCorner() : ChasteCuboid< SPACE_DIM >
• Rotate() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• RotateX() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• RotateY() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• RotateZ() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• Run() : CardiacSimulation
• RunAndUpdate() : AbstractOdeBasedContractionModel , NhsModelWithBackwardSolver , AbstractAlgebraicContractionModel , AbstractContractionModel
• RunDoNotUpdate() : AbstractContractionModel , AbstractAlgebraicContractionModel , AbstractOdeBasedContractionModel , NhsModelWithBackwardSolver
• RungeKutta2IvpOdeSolver() : RungeKutta2IvpOdeSolver
• RungeKuttaFehlbergIvpOdeSolver() : RungeKuttaFehlbergIvpOdeSolver