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• ObjectCommunicator() : ObjectCommunicator
• OdeLinearSystemSolver() : OdeLinearSystemSolver
• OdeSolution() : OdeSolution
• OdeSystemForCoupledHeatEquation() : OdeSystemForCoupledHeatEquation
• OdeSystemForCoupledHeatEquationWithSource() : OdeSystemForCoupledHeatEquationWithSource
• OdeSystemInformation() : OdeSystemInformation< ODE_SYSTEM >
• OffLatticeSimulation() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• OnEndOfTimeStep() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• OnEndOfTimestep() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
• OnLatticeSimulation() : OnLatticeSimulation< DIM >
• OpenCableElementsFile() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• OpenElementFile() : MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
• OpenElementFiles() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
• OpenElementsFile() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , PottsMeshReader< SPACE_DIM > , SemMeshReader< SPACE_DIM >
• OpenFaceFile() : MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
• OpenFacesFile() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• OpenFileAndWriteHeader() : FibreWriter< DIM >
• OpenFiles() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , PottsMeshReader< SPACE_DIM > , SemMeshReader< SPACE_DIM >
• OpenNclFile() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• OpenNodeFile() : PottsMeshReader< SPACE_DIM > , SemMeshReader< SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM > , MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
• OpenOutputFile() : OutputFileHandler
• OpenResultsFiles() : CellBasedPdeHandler< DIM >
• operator!=() : DistributedVector::Iterator , AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator , PottsMesh< DIM >::PottsElementIterator , SemMesh< DIM >::SemElementIterator , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
• operator()() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 > , LessThanNode< SPACE_DIM > , null_deleter
• operator*() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator , PottsMesh< DIM >::PottsElementIterator , SemMesh< DIM >::SemElementIterator , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
• operator++() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator , PottsMesh< DIM >::PottsElementIterator , SemMesh< DIM >::SemElementIterator , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator , DistributedVector::Iterator , AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator
• operator->() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator , PottsMesh< DIM >::PottsElementIterator , SemMesh< DIM >::SemElementIterator , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
• operator<<() : LogFile
• operator=() : CardiacNewtonSolver< SIZE, CELLTYPE > , HeartRegionCode , CombinedOdeSystemInformation , OdeSystemInformation< ODE_SYSTEM > , CellPropertyRegistry
• operator==() : Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator
• operator[]() : AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM > , DistributedVector , DistributedVector::Stripe , DistributedVector::Chunk , DistributedVector , ReplicatableVector , ChastePoint< DIM > , ChastePoint< 0 >
• OperatorSplittingMonodomainSolver() : OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
• OptionExists() : CommandLineArguments
• OutputAdditionalSimulationSetup() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > , OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM > , OnLatticeSimulation< DIM >
• OutputCellCycleModelInfo() : AbstractCellCycleModel
• OutputCellCycleModelParameters() : FixedDurationGenerationBasedCellCycleModel , StochasticOxygenBasedCellCycleModel , AbstractSimpleGenerationBasedCellCycleModel , AbstractCellCycleModel , AbstractOdeBasedCellCycleModel , AbstractSimpleCellCycleModel , Alarcon2004OxygenBasedCellCycleModel , ContactInhibitionCellCycleModel , DeltaNotchCellCycleModel , SimpleOxygenBasedCellCycleModel , StochasticDurationCellCycleModel , StochasticDurationGenerationBasedCellCycleModel , TysonNovakCellCycleModel , AbstractVanLeeuwen2009WntSwatCellCycleModel , AbstractWntOdeBasedCellCycleModel , SimpleWntCellCycleModel , SingleOdeWntCellCycleModel , StochasticWntCellCycleModel , VanLeeuwen2009WntSwatCellCycleModelHypothesisOne , WntCellCycleModel , VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo
• OutputCellKillerInfo() : AbstractCellKiller< SPACE_DIM >
• OutputCellKillerParameters() : RadialSloughingCellKiller , TargetedCellKiller< DIM > , SloughingCellKiller< DIM > , RandomCellKiller< DIM > , ApoptoticCellKiller< SPACE_DIM > , AbstractCellKiller< SPACE_DIM > , PlaneBasedCellKiller< DIM >
• OutputCellPopulationBoundaryConditionInfo() : AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
• OutputCellPopulationBoundaryConditionParameters() : AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM > , SphereGeometryBoundaryCondition< DIM > , PlaneBoundaryCondition< DIM > , CryptSimulationBoundaryCondition< DIM >
• OutputCellPopulationInfo() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• OutputCellPopulationParameters() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulationWithParticles< DIM > , PottsBasedCellPopulation< DIM > , NodeBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM > , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulationWithBuskeUpdate< DIM > , MultipleCaBasedCellPopulation< DIM > , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > , AbstractOnLatticeCellPopulation< DIM > , MeshBasedCellPopulationWithGhostNodes< DIM >
• OutputDirectoryFifoQueue() : OutputDirectoryFifoQueue
• OutputFileHandler() : OutputFileHandler
• OutputForceInfo() : AbstractForce< ELEMENT_DIM, SPACE_DIM >
• OutputForceParameters() : RepulsionForce< DIM > , BuskeElasticForce< DIM > , VertexCryptBoundaryForce< DIM > , NagaiHondaForce< DIM > , CryptProjectionForce , AbstractForce< ELEMENT_DIM, SPACE_DIM > , WelikyOsterForce< DIM > , DiffusionForce< DIM > , AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM > , ChemotacticForce< DIM > , NagaiHondaDifferentialAdhesionForce< DIM > , GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM > , LinearSpringWithVariableSpringConstantsForce< DIM > , BuskeAdhesiveForce< DIM > , BuskeCompressionForce< DIM >
• OutputMeshAsVtkUnstructuredGrid() : VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
• OutputParameters() : CellBasedPdeHandler< DIM >
• OutputSimulationParameters() : CryptSimulation2d , OnLatticeSimulation< DIM > , CryptSimulation1d , AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > , OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• OutputSimulationSetup() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• OutputUpdateRuleInfo() : AbstractPottsUpdateRule< DIM > , AbstractMultipleCaUpdateRule< DIM >
• OutputUpdateRuleParameters() : SurfaceAreaConstraintPottsUpdateRule< DIM > , AbstractPottsUpdateRule< DIM > , DiffusionMultipleCaUpdateRule< DIM > , ChemotaxisPottsUpdateRule< DIM > , AbstractMultipleCaUpdateRule< DIM > , DifferentialAdhesionPottsUpdateRule< DIM > , VolumeConstraintPottsUpdateRule< DIM > , AdhesionPottsUpdateRule< DIM >