AbstractElement< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractElement.hpp>

Inheritance diagram for AbstractElement< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for AbstractElement< ELEMENT_DIM, SPACE_DIM >:

List of all members.

Public Member Functions
	AbstractElement (unsigned index, const std::vector< Node< SPACE_DIM > * > &rNodes)
	AbstractElement (unsigned index=INDEX_IS_NOT_USED)
virtual	~AbstractElement ()
virtual void	UpdateNode (const unsigned &rIndex, Node< SPACE_DIM > *pNode)=0
void	ReplaceNode (Node< SPACE_DIM > *pOldNode, Node< SPACE_DIM > *pNewNode)
virtual void	MarkAsDeleted ()=0
virtual void	RegisterWithNodes ()=0
double	GetNodeLocation (unsigned localIndex, unsigned dimension) const
c_vector< double, SPACE_DIM >	GetNodeLocation (unsigned localIndex) const
unsigned	GetNodeGlobalIndex (unsigned localIndex) const
Node< SPACE_DIM > *	GetNode (unsigned localIndex) const
unsigned	GetNumNodes () const
void	AddNode (Node< SPACE_DIM > *pNode)
bool	IsDeleted () const
unsigned	GetIndex () const
void	SetIndex (unsigned index)
bool	GetOwnership () const
void	SetOwnership (bool ownership)
void	Flag ()
void	Unflag ()
bool	IsFlagged () const
void	SetAttribute (double attribute)
double	GetAttribute ()
unsigned	GetUnsignedAttribute ()
Protected Attributes
std::vector< Node< SPACE_DIM > * >	mNodes
unsigned	mIndex
double	mAttribute
bool	mIsDeleted
bool	mOwnership
bool	mFlag

---

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractElement< ELEMENT_DIM, SPACE_DIM >

An abstract element class for use in finite element meshes.

Definition at line 54 of file AbstractElement.hpp.

---

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement	(	unsigned	index,
		const std::vector< Node< SPACE_DIM > * > &	rNodes
	)

Constructor which takes in a vector of nodes.

Parameters:

index	the index of the element in the mesh
rNodes	the nodes owned by the element

Definition at line 47 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement

(

unsigned

index = INDEX_IS_NOT_USED

)

Default constructor, which doesn't add any nodes: they must be added later.

Parameters:

index

the index of the element in the mesh (defaults to INDEX_IS_NOT_USED)

Definition at line 62 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual AbstractElement< ELEMENT_DIM, SPACE_DIM >::~AbstractElement

(

)

[inline, virtual]

Virtual destructor, since this class has virtual methods. Does nothing special.

Definition at line 100 of file AbstractElement.hpp.

---

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddNode

(

Node< SPACE_DIM > *

pNode

)

Add a node to this element.

Parameters:

pNode

pointer to the new node

Definition at line 126 of file AbstractElement.cpp.

Referenced by QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::Flag

(

)

Mark the element as flagged.

Definition at line 162 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute

(

)

Get the element's attribute value

Definition at line 186 of file AbstractElement.cpp.

Referenced by BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreateJunction(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex

(

)

const

Get the index of this element

Definition at line 138 of file AbstractElement.cpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::AddElement(), SemMesh< DIM >::AddElement(), PottsMesh< DIM >::AddElement(), NagaiHondaForce< DIM >::AddForceContribution(), ContinuumMechanicsNeumannBcsAssembler< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AveragedSourcePde< DIM >::ComputeLinearInUCoeffInSourceTerm(), MonodomainStiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), ExtendedBidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), BidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongShortAxis(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidDeformationGradient(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), Cylindrical2dMesh::ReconstructCylindricalMesh(), SemMesh< DIM >::ReMesh(), SemMesh< DIM >::SemMesh(), and VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

Node< SPACE_DIM > * AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNode

(

unsigned

localIndex

)

const

Get the node with a given local index in this element.

Parameters:

localIndex

local index of the node in this element

Returns:

a pointer to the node.

Definition at line 113 of file AbstractElement.cpp.

Referenced by VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), NagaiHondaForce< DIM >::AddForceContribution(), BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AddNeumannBoundaryCondition(), QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), CellBasedPdeHandler< DIM >::FindCoarseElementContainingCell(), StreeterFibreGenerator< SPACE_DIM >::GenerateOrthotropicFibreOrientation(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator::GetNodeB(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetUnitNormalToFace(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), SemMesh< DIM >::ReMesh(), Cylindrical2dMesh::ReMesh(), SemMesh< DIM >::SemMesh(), FineCoarseMeshPair< DIM >::SetUpBoxes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), and DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex

(

unsigned

localIndex

)

const

Given the local index of a node owned by this element, return the global index of the node in the mesh.

Parameters:

localIndex

the node's local index in this element

Returns:

the global index

Definition at line 106 of file AbstractElement.cpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), QuadraticMeshHelper< DIM >::AddExtraBoundaryNodes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), QuadraticMeshHelper< DIM >::AddNodesToBoundaryElements(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMaximumNodeConnectivityPerProcess(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CheckOutwardNormals(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::ComputeDeformationGradientAndStretchInEachElement(), MonodomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), Cylindrical2dMesh::CorrectNonPeriodicMesh(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidDeformationGradient(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), AbstractTetrahedralElement< 0, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), QuadraticMeshHelper< DIM >::HelperMethod1(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator::operator++(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), QuadraturePointsGroup< DIM >::QuadraturePointsGroup(), Cylindrical2dMesh::ReconstructCylindricalMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CellwiseDataGradient< DIM >::SetupGradients(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), CellBasedPdeHandler< DIM >::SolvePdeAndWriteResultsToFile(), Cylindrical2dMesh::UseTheseElementsToDecideMeshing(), VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh(), VertexBasedCellPopulation< DIM >::WriteResultsToFiles(), and PottsBasedCellPopulation< DIM >::WriteResultsToFiles().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation	(	unsigned	localIndex,
		unsigned	dimension
	)		const

Get a single component of the location in space of one of the nodes in this element.

Parameters:

localIndex	the index of the node to query, in [0,N) where N is the number of nodes in this element.
dimension	the spatial dimension to query.

Definition at line 86 of file AbstractElement.cpp.

Referenced by VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaOfFace(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), PottsMesh< DIM >::GetCentroidOfElement(), Cylindrical2dVertexMesh::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), Cylindrical2dVertexMesh::GetVolumeOfElement(), and MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, SPACE_DIM > AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation

(

unsigned

localIndex

)

const

Get the location in space of one of the nodes in this element.

Parameters:

localIndex

the index of the node to query, in [0,N) where N is the number of nodes in this element.

Definition at line 99 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes

(

)

const

Get the number of nodes owned by this element.

Definition at line 120 of file AbstractElement.cpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), NagaiHondaForce< DIM >::AddForceContribution(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaOfFace(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), PottsMesh< DIM >::GetCentroidOfElement(), Cylindrical2dVertexMesh::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), PottsMesh< DIM >::GetVolumeOfElement(), Cylindrical2dVertexMesh::GetVolumeOfElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), PottsMesh< DIM >::PottsMesh(), SemMesh< DIM >::ReMesh(), MutableElement< 1, SPACE_DIM >::ResetIndex(), SemMesh< DIM >::SemMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh(), DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue(), VertexBasedCellPopulation< DIM >::WriteResultsToFiles(), and PottsBasedCellPopulation< DIM >::WriteResultsToFiles().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership

(

)

const

Get whether the current process owns this element.

Definition at line 150 of file AbstractElement.cpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), and AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute

(

)

This method converts the attribute (stored as a double) to an unsigned, and throws an exception if this is not sensible.

Returns:

an unsigned attribute value.

Definition at line 192 of file AbstractElement.cpp.

References EXCEPTION.

Referenced by BidomainProblem< DIM >::AnalyseMeshForBath(), ExtendedBidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), BidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), and PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ShouldSkipThisElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsDeleted

(

)

const

Get whether the element is marked as deleted.

Returns:

mIsDeleted

Definition at line 132 of file AbstractElement.cpp.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), Cylindrical2dMesh::ReconstructCylindricalMesh(), and Cylindrical2dMesh::ReMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsFlagged

(

)

const

Get whether the element is flagged.

Definition at line 174 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted

(

)

[pure virtual]

Mark the element as having been removed from the mesh. Also notify nodes in the element that it has been removed.

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes

(

)

[pure virtual]

Inform all nodes forming this element that they are in this element.

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode	(	Node< SPACE_DIM > *	pOldNode,
		Node< SPACE_DIM > *	pNewNode
	)

Replace one of the nodes in this element with another.

Parameters:

pOldNode	pointer to the current node
pNewNode	pointer to the replacement node

Definition at line 71 of file AbstractElement.cpp.

References EXCEPTION.

Referenced by Cylindrical2dMesh::ReconstructCylindricalMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute

(

double

attribute

)

Set an attribute (a value associated with the element)

Parameters:

attribute

the value of an attribute

Definition at line 180 of file AbstractElement.cpp.

Referenced by TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), SemMesh< DIM >::ConstructFromMeshReader(), and PottsMesh< DIM >::ConstructFromMeshReader().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetIndex

(

unsigned

index

)

Set the index of this element in the mesh.

Parameters:

index

the new index

Definition at line 144 of file AbstractElement.cpp.

Referenced by SemMesh< DIM >::AddElement(), and MutableMesh< ELEMENT_DIM, SPACE_DIM >::ReIndex().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetOwnership

(

bool

ownership

)

Set whether the current process owns this element.

Parameters:

ownership

whether the current process now owns this element

Definition at line 156 of file AbstractElement.cpp.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::Unflag

(

)

Mark the element as not flagged.

Definition at line 168 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode	(	const unsigned &	rIndex,
		Node< SPACE_DIM > *	pNode
	)		[pure virtual]

Update node at the given index.

Parameters:

rIndex	is an local index to which node to change
pNode	is a pointer to the replacement node

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

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Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractElement< ELEMENT_DIM, SPACE_DIM >::mAttribute [protected]

An attribute (a value associated with the element)

Definition at line 65 of file AbstractElement.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mFlag [protected]

A flag for the use of higher level algorithms.

Definition at line 77 of file AbstractElement.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex [protected]

The index of this element within the mesh

Definition at line 62 of file AbstractElement.hpp.

Referenced by MutableElement< 1, SPACE_DIM >::AddNode(), MutableElement< 1, SPACE_DIM >::DeleteNode(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), MutableElement< 1, SPACE_DIM >::ResetIndex(), and MutableElement< 1, SPACE_DIM >::UpdateNode().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted [protected]

Whether this element has been deleted, and hence whether its location in the mesh can be re-used.

Definition at line 71 of file AbstractElement.hpp.

Referenced by MutableElement< 1, SPACE_DIM >::MarkAsDeleted().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::vector<Node<SPACE_DIM>*> AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes [protected]

The nodes forming this element.

Definition at line 59 of file AbstractElement.hpp.

Referenced by AbstractTetrahedralElement< 0, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement(), MutableElement< 1, SPACE_DIM >::AddNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::BoundaryElement(), AbstractTetrahedralElement< 0, SPACE_DIM >::CalculateCentroid(), MutableElement< 1, SPACE_DIM >::DeleteNode(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MutableElement(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), MutableElement< 1, SPACE_DIM >::ResetIndex(), MutableElement< 1, SPACE_DIM >::UpdateNode(), and VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership [protected]

Whether the current process owns this element.

Definition at line 74 of file AbstractElement.hpp.

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The documentation for this class was generated from the following files:

• mesh/src/common/AbstractElement.hpp
• mesh/src/common/AbstractElement.cpp