Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
SimpleWntCellCycleModel.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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34*/
35
36#ifndef SIMPLEWNTCELLCYCLEMODEL_HPP_
37#define SIMPLEWNTCELLCYCLEMODEL_HPP_
38
39#include "AbstractSimplePhaseBasedCellCycleModel.hpp"
40#include "RandomNumberGenerator.hpp"
41#include "WntConcentration.hpp"
42
47{
48private:
49
58 template<class Archive>
59 void serialize(Archive & archive, const unsigned int version)
60 {
61 archive & boost::serialization::base_object<AbstractSimplePhaseBasedCellCycleModel>(*this);
62
64 archive & *p_gen;
65
67 archive & mWntStemThreshold;
68 archive & mWntTransitThreshold;
69 archive & mWntLabelledThreshold;
70 }
71
72protected:
73
79
84
89
94
98 double GetWntLevel() const;
99
104 WntConcentrationType GetWntType();
105
115 void SetG1Duration();
116
131
132public:
133
139
143 virtual void UpdateCellCyclePhase();
144
148 virtual void InitialiseDaughterCell();
149
157
162
163
168 void SetUseCellProliferativeTypeDependentG1Duration(bool useCellProliferativeTypeDependentG1Duration=true);
169
174 virtual bool CanCellTerminallyDifferentiate();
175
179 double GetWntStemThreshold() const;
180
186 void SetWntStemThreshold(double wntStemThreshold);
187
191 double GetWntTransitThreshold() const;
192
198 void SetWntTransitThreshold(double wntTransitThreshold);
199
203 double GetWntLabelledThreshold() const;
204
210 void SetWntLabelledThreshold(double wntLabelledThreshold);
211
217 virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
218};
219
221// Declare identifier for the serializer
223
224#endif /*SIMPLEWNTCELLCYCLEMODEL_HPP_*/
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
static RandomNumberGenerator * Instance()
void SetWntStemThreshold(double wntStemThreshold)
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
void SetWntTransitThreshold(double wntTransitThreshold)
virtual AbstractCellCycleModel * CreateCellCycleModel()
void SetWntLabelledThreshold(double wntLabelledThreshold)
void SetUseCellProliferativeTypeDependentG1Duration(bool useCellProliferativeTypeDependentG1Duration=true)
WntConcentrationType GetWntType()
bool GetUseCellProliferativeTypeDependentG1Duration() const
void serialize(Archive &archive, const unsigned int version)
friend class boost::serialization::access