Here is a list of all documented class members with links to the class documentation for each member:

- c -

• Ca_up_max : DiFrancescoNoble1985OdeSystem
• CalcActiveTensionResidual() : NhsSystemWithImplicitSolver
• calcium_background_current_g_bca : TenTusscher2006OdeSystem
• calcium_dynamics_Buf_c : TenTusscher2006OdeSystem
• calcium_dynamics_Buf_sr : TenTusscher2006OdeSystem
• calcium_dynamics_Buf_ss : TenTusscher2006OdeSystem
• calcium_dynamics_Ca_o : TenTusscher2006OdeSystem
• calcium_dynamics_EC : TenTusscher2006OdeSystem
• calcium_dynamics_k1_prime : TenTusscher2006OdeSystem
• calcium_dynamics_k2_prime : TenTusscher2006OdeSystem
• calcium_dynamics_k3 : TenTusscher2006OdeSystem
• calcium_dynamics_k4 : TenTusscher2006OdeSystem
• calcium_dynamics_K_buf_c : TenTusscher2006OdeSystem
• calcium_dynamics_K_buf_sr : TenTusscher2006OdeSystem
• calcium_dynamics_K_buf_ss : TenTusscher2006OdeSystem
• calcium_dynamics_K_up : TenTusscher2006OdeSystem
• calcium_dynamics_max_sr : TenTusscher2006OdeSystem
• calcium_dynamics_min_sr : TenTusscher2006OdeSystem
• calcium_dynamics_V_leak : TenTusscher2006OdeSystem
• calcium_dynamics_V_rel : TenTusscher2006OdeSystem
• calcium_dynamics_V_sr : TenTusscher2006OdeSystem
• calcium_dynamics_V_ss : TenTusscher2006OdeSystem
• calcium_dynamics_V_xfer : TenTusscher2006OdeSystem
• calcium_dynamics_Vmax_up : TenTusscher2006OdeSystem
• calcium_pump_current_g_pCa : TenTusscher2006OdeSystem
• calcium_pump_current_K_pCa : TenTusscher2006OdeSystem
• Calculate() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateActionPotentialDuration() : PropagationPropertiesCalculator
• CalculateActionPotentialDurations() : CellProperties
• CalculateAllActionPotentialDurations() : PropagationPropertiesCalculator
• CalculateAllConductionVelocities() : PropagationPropertiesCalculator
• CalculateAllMaximumUpstrokeVelocities() : PropagationPropertiesCalculator
• CalculateBoundaryOfFlaggedRegion() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateCalciumTrop50() : NhsCellularMechanicsOdeSystem
• CalculateCentroid() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalculateCircumsphere() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateCircumsphereVolume() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateConductionVelocity() : PropagationPropertiesCalculator
• CalculateContainingBox() : NodeBoxCollection< DIM >
• CalculateDividingCellCentreLocations() : CryptSimulation2d , TissueSimulation< DIM >
• CalculateFibreOrientations() : PapillaryFibreCalculator
• CalculateForceBetweenNodes() : AbstractTwoBodyInteractionForce< DIM > , GeneralisedLinearSpringForce< DIM > , MeshBasedTissueWithGhostNodes< DIM >
• CalculateInterpolationWeights() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInterpolationWeightsWithProjection() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInverseJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateLocalBoxes() : NodeBoxCollection< DIM >
• CalculateMaximumUpstrokeVelocity() : PropagationPropertiesCalculator
• CalculateNextTime() : TimeStepper
• CalculateNextYValue() : AbstractOneStepIvpOdeSolver , BackwardEulerIvpOdeSolver , EulerIvpOdeSolver , RungeKutta2IvpOdeSolver , RungeKutta4IvpOdeSolver , RungeKuttaFehlbergIvpOdeSolver
• CalculateNodePairs() : NodeBoxCollection< DIM >
• CalculateOnElement() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateOwnership() : DistributedVectorFactory
• CalculatePeakMembranePotential() : PropagationPropertiesCalculator
• CalculateProperties() : CellProperties
• CalculatePsi() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateQuality() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateRelativeWallPosition() : HeartGeometryInformation< SPACE_DIM >
• CalculateResidualNorm() : AbstractNonlinearElasticityAssembler< DIM >
• CalculateRootFunction() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateStoppingEvent() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateT0() : NhsCellularMechanicsOdeSystem
• CalculateUpstrokeTimes() : PropagationPropertiesCalculator
• CalculateWeightedDirection() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalcZResidual() : NhsSystemWithImplicitSolver
• CancerEventType : CancerEventHandler
• Cao : DiFrancescoNoble1985OdeSystem
• CardiacElectroMechanicsProblem() : CardiacElectroMechanicsProblem< DIM >
• CardiacElectroMechProbRegularGeom() : CardiacElectroMechProbRegularGeom< DIM >
• CardiacNewtonSolver() : CardiacNewtonSolver< SIZE >
• CartToEucliDistance() : DistanceMapCalculator< SPACE_DIM >
• CellIsInSection() : CryptStatistics
• CellIsInSectionPeriodic() : CryptStatistics
• CellProperties() : CellProperties
• CellsCanDifferentiate() : AbstractCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
• CellwiseData() : CellwiseData< DIM >
• CellwiseOdeSystemInformation() : CellwiseOdeSystemInformation< ODE_SYSTEM >
• ChangeCellTypeDueToCurrentBetaCateninLevel() : AbstractWntOdeBasedCellCycleModel , IngeWntSwatCellCycleModel , WntCellCycleModel
• ChasteCuboid() : ChasteCuboid
• ChastePoint() : ChastePoint< DIM > , ChastePoint< 0 >
• CheckCache() : PetscTools
• CheckCompatibilityCondition() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• CheckForPetsc() : DistributedVectorFactory
• CheckTimeSteps() : HeartConfig
• CheckTissueCellPointers() : MeshBasedTissue< DIM >
• CheckUnitsName() : ColumnDataWriter , Hdf5DataWriter
• CheckVariableName() : ColumnDataWriter , Hdf5DataWriter
• CheckVectorSizes() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CheckVentricleAlignment() : StreeterFibreGenerator< SPACE_DIM >
• CheckVoronoi() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• Chunk() : DistributedVector::Chunk
• Clear() : AbstractStimulusFunction , MultiStimulus , MutableMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedTissue< DIM >
• Close() : Hdf5DataWriter , ParallelColumnDataWriter , LogFile , Hdf5DataReader , AbstractDataWriter , ColumnDataWriter
• CloseFibreOrientationFile() : AbstractConductivityTensors< SPACE_DIM >
• CloseFiles() : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• CloseFilesAndPostProcess() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CloseOutputFiles() : AbstractTissue< DIM > , MeshBasedTissue< DIM >
• CmguiWriter() : CmguiWriter
• CMT_CLS : AssemblerTraits< BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< BidomainRhsMatrixAssembler< DIM > > , AssemblerTraits< BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > > , AssemblerTraits< MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< T > , AssemblerTraits< boost::mpl::void_ > , AssemblerTraits< SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > > , AssemblerTraits< SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > >
• ColumnDataReader() : ColumnDataReader
• ColumnDataWriter() : ColumnDataWriter
• CombinedOdeSystem() : CombinedOdeSystem
• CombinedOdeSystemInformation() : CombinedOdeSystemInformation
• CommonConstructor() : Node< SPACE_DIM >
• CommonCopy() : TissueCell
• Compute() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractCardiacCell
• Compute1stPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• Compute2ndPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeAndSetAngle() : VertexAndAngle< DIM >
• ComputeBasisFunction() : LinearBasisFunction< ELEM_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEM_DIM > , QuadraticBasisFunction< 0 > , LinearBasisFunction< ELEM_DIM >
• ComputeBasisFunctionDerivative() : LinearBasisFunction< ELEM_DIM > , QuadraticBasisFunction< ELEM_DIM > , LinearBasisFunction< ELEM_DIM >
• ComputeBasisFunctionDerivatives() : LinearBasisFunction< ELEM_DIM > , QuadraticBasisFunction< ELEM_DIM >
• ComputeBasisFunctions() : QuadraticBasisFunction< 0 > , LinearBasisFunction< ELEM_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEM_DIM >
• ComputeCauchyStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeConstantInUSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeConstantInUSourceTermAtNode() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeDiffusionTerm() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeDiffusionTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeDistanceMap() : DistanceMapCalculator< SPACE_DIM >
• ComputeDuDtCoefficientFunction() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM >
• ComputeExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractCardiacCell , FakeBathCell
• ComputeJacobian() : BackwardEulerLuoRudyIModel1991 , AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerIvpOdeSolver
• ComputeLinearInUCoeffInSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeLinearInUCoeffInSourceTermAtNode() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeLinearSourceTerm() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeLinearSourceTermAtNode() : AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM >
• ComputeMatrixTerm() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE >
• ComputeMeshPartitioning() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ComputeNonlinearSourceTerm() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNonlinearSourceTermAtNode() : MonodomainPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEM_DIM, SPACE_DIM >
• ComputeNonlinearSourceTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNorm() : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
• ComputeNumericalJacobian() : BackwardEulerIvpOdeSolver
• ComputeOneStepExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerLuoRudyIModel1991 , BackwardEulerFoxModel2002Modified
• ComputeResidual() : AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerLuoRudyIModel1991 , BackwardEulerIvpOdeSolver
• ComputeStressAndStressDerivative() : AbstractIncompressibleMaterialLaw< DIM > , AbstractIsotropicIncompressibleMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
• ComputeTransformedBasisFunctionDerivatives() : QuadraticBasisFunction< ELEM_DIM > , LinearBasisFunction< ELEM_DIM > , AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• ComputeVectorSurfaceTerm() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , BidomainWithBathRhsMatrixAssembler< DIM > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• ComputeVectorTerm() : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM >
• ConductionVelocity : AbstractUntemplatedConvergenceTester
• Configure() : CombinedOdeSystem
• ConstBoundaryCondition() : ConstBoundaryCondition< SPACE_DIM >
• Construct() : CuboidMeshConstructor< DIM >
• ConstructCuboid() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructFromMeshReader() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructHyperCube() : CuboidMeshConstructor< DIM >
• ConstructLinearMesh() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructRectangularMesh() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructStructureTensors() : PapillaryFibreCalculator
• ConstructVectorForMatrixBasedRhsAssembly() : BidomainWithBathMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
• ContainingBoundaryElementIterator() : Node< SPACE_DIM >::ContainingBoundaryElementIterator
• ContainingBoundaryElementsBegin() : Node< SPACE_DIM >
• ContainingBoundaryElementsEnd() : Node< SPACE_DIM >
• ContainingElementIterator() : Node< SPACE_DIM >::ContainingElementIterator
• ContainingElementsBegin() : Node< SPACE_DIM >
• ContainingElementsEnd() : Node< SPACE_DIM >
• Converge() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , AbstractUntemplatedConvergenceTester
• Converged : AbstractUntemplatedConvergenceTester
• ConvertOutputToMeshalyzerFormat() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• ConvertTicksToMilliseconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ConvertTicksToSeconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CorrectNonPeriodicMesh() : Cylindrical2dMesh
• CreateAssembler() : MonodomainProblem< ELEM_DIM, SPACE_DIM > , BidomainProblem< DIM > , AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CreateCardiacCellForNode() : AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
• CreateCardiacCellForTissueNode() : PlaneStimulusCellFactory< CELL, ELEM_DIM, SPACE_DIM > , AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM > , QuarterStimulusCellFactory< CELL, DIM > , ZeroStimulusCellFactory< CELL, DIM >
• CreateCardiacPde() : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , MonodomainProblem< ELEM_DIM, SPACE_DIM > , BidomainProblem< DIM >
• CreateCellCycleModel() : SimpleWntCellCycleModel , StochasticDurationGenerationBasedCellCycleModel , StochasticWntCellCycleModelCellsGenerator< DIM > , TysonNovakCellCycleModelCellsGenerator< DIM > , WntCellCycleModel , TysonNovakCellCycleModel , IngeWntSwatCellCycleModelCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , IngeWntSwatCellCycleModel , StochasticWntCellCycleModel , SimpleWntCellCycleModelCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModel , AbstractCellsGenerator< DIM > , WntCellCycleModelCellsGenerator< DIM > , AbstractCellCycleModel , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
• CreateCellPair() : MeshBasedTissue< DIM >
• CreateConstantInitialGuess() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• CreateDistributedVector() : DistributedVectorFactory
• CreateFixedDimensionFile() : ColumnDataWriter
• CreateHaloNodes() : Cylindrical2dMesh
• CreateInfoFile() : ColumnDataWriter
• CreateInitialCondition() : BidomainProblem< DIM > , AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• CreateMirrorNodes() : Cylindrical2dMesh
• CreateOutputFiles() : MeshBasedTissue< DIM > , AbstractTissue< DIM >
• CreateVec() : PetscTools , DistributedVectorFactory
• CreateVoronoiTessellation() : MeshBasedTissue< DIM >
• CryptSimulation2d() : CryptSimulation2d
• CryptStatistics() : CryptStatistics
• CVT_CLS : AssemblerTraits< boost::mpl::void_ > , AssemblerTraits< MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM > > , AssemblerTraits< MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< BidomainRhsMatrixAssembler< DIM > > , AssemblerTraits< SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > > , AssemblerTraits< SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > > , AssemblerTraits< BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > > , AssemblerTraits< T > , AssemblerTraits< BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
• Cylindrical2dMesh() : Cylindrical2dMesh