Here is a list of all documented class members with links to the class documentation for each member:
- g_ca_b
: DiFrancescoNoble1985OdeSystem
- g_fk
: DiFrancescoNoble1985OdeSystem
- g_fna
: DiFrancescoNoble1985OdeSystem
- g_k1
: DiFrancescoNoble1985OdeSystem
- g_na
: DiFrancescoNoble1985OdeSystem
- g_na_b
: DiFrancescoNoble1985OdeSystem
- g_to
: DiFrancescoNoble1985OdeSystem
- gamma
: DiFrancescoNoble1985OdeSystem
- GaussianQuadratureRule()
: GaussianQuadratureRule< ELEM_DIM >
- GeneralisedLinearSpringForce()
: GeneralisedLinearSpringForce< DIM >
- GeneralPlaneStimulusCellFactory()
: GeneralPlaneStimulusCellFactory< CELL, ELEM_DIM, SPACE_DIM >
- GenerateBasic()
: AbstractCellsGenerator< DIM >
- GenerateCellResults()
: AbstractTissue< DIM >
- GenerateCellResultsAndWriteToFiles()
: AbstractTissue< DIM >
, MeshBasedTissueWithGhostNodes< DIM >
- GenerateForCrypt()
: AbstractCellsGenerator< DIM >
- GenerateGivenLocationIndices()
: FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
- GenerateNullBasis()
: BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
- GenerateOrthotropicFibreOrientation()
: StreeterFibreGenerator< SPACE_DIM >
- GenerateVectorsOfElementsStraddlingPeriodicBoundaries()
: Cylindrical2dMesh
- GenerateVerticesFromElementCircumcentres()
: VoronoiTessellation< DIM >
- Get()
: QuadraturePointsGroup< DIM >
- Get_d2W_dI1()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI1I2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI1()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- GetA()
: ExponentialMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GetAbsoluteTolerance()
: HeartConfig
- GetActionPotentialAmplitudes()
: CellProperties
- GetActiveTension()
: NhsCellularMechanicsOdeSystem
- GetActiveTensionAtNextTime()
: NhsSystemWithImplicitSolver
- GetAge()
: AbstractCellCycleModel
, TissueCell
- GetAllActionPotentialDurations()
: CellProperties
- GetAlpha()
: PolynomialMaterialLaw3d
- GetAncestor()
: TissueCell
- GetAngle()
: VertexAndAngle< DIM >
- GetAngleBetweenNodes()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetApdMaps()
: HeartConfig
- GetApoptosisTime()
: TissueConfig
- GetApoptoticSpringCompressionStiffness()
: TissueConfig
- GetApoptoticSpringTensionStiffness()
: TissueConfig
- GetArchiveDirectory()
: ArchiveLocationInfo
- GetArchivePathname()
: TissueSimulationArchiver< DIM, SIM >
- GetArchiveRelativePath()
: ArchiveLocationInfo
- GetArea()
: Face< DIM >
- GetAreaBasedDampingConstantParameter()
: TissueConfig
- GetAveragedThickness()
: StreeterFibreGenerator< SPACE_DIM >
- GetB()
: ExponentialMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GetBathConductivity()
: HeartConfig
- GetBetaCatSpringScaler()
: TissueConfig
- GetBidomainPde()
: BidomainProblem< DIM >
- GetBirthTime()
: AbstractCellCycleModel
, TissueCell
- GetBoundaryConditionsContainer()
: Electrodes< DIM >
- GetBoundaryElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorBegin()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorEnd()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetC1()
: MooneyRivlinMaterialLaw< DIM >
- GetC2()
: MooneyRivlinMaterialLaw< DIM >
- GetCalciumTroponinValue()
: NhsCellularMechanicsOdeSystem
- GetCallCount()
: MockEulerIvpOdeSolver
- GetCapacitance()
: HeartConfig
- GetCardiacCell()
: AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
- GetCell()
: AbstractCellCycleModel
- GetCellAncestors()
: AbstractTissue< DIM >
- GetCellBoundaryAdhesionEnergyParameter()
: TissueConfig
- GetCellCellAdhesionEnergyParameter()
: TissueConfig
- GetCellCycleModel()
: TissueCell
- GetCellCyclePhaseCount()
: AbstractTissue< DIM >
- GetCellHeterogeneities()
: HeartConfig
- GetCellId()
: TissueCell
- GetCellLocationIndices()
: HoneycombMeshGenerator
- GetCellMutationStateCount()
: AbstractTissue< DIM >
- GetCellsDistributed()
: AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
- GetCellType()
: TissueCell
- GetCellTypeCount()
: AbstractTissue< DIM >
- GetChasteTestOutputDirectory()
: OutputFileHandler
- GetCircularMesh()
: HoneycombMeshGenerator
- GetConductionVelocityMaps()
: HeartConfig
- GetConductivityHeterogeneities()
: HeartConfig
- GetConductivityHeterogeneitiesProvided()
: HeartConfig
- GetConductivityMedia()
: HeartConfig
- GetContainingElementIndex()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndices()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetCorrespondingNodeIndex()
: Cylindrical2dMesh
- GetCpuTime()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetCreateFibre()
: HeartConfig
- GetCreateMesh()
: HeartConfig
- GetCreateSheet()
: HeartConfig
- GetCreateSlab()
: HeartConfig
- GetCriticalHypoxicDuration()
: TissueConfig
- GetCryptLength()
: TissueConfig
- GetCryptProjectionParameterA()
: TissueConfig
- GetCryptProjectionParameterB()
: TissueConfig
- GetCryptSection()
: CryptStatistics
- GetCryptSectionPeriodic()
: CryptStatistics
- GetCryptWidth()
: TissueConfig
- GetCurrentCellCyclePhase()
: AbstractCellCycleModel
- GetCurrentSolutionOrGuessValue()
: AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
- GetCutoffPoint()
: AbstractTwoBodyInteractionForce< DIM >
- GetCycleLengths()
: CellProperties
- GetCylindricalMesh()
: HoneycombMeshGenerator
- GetCytoplasmicBetaCateninLevel()
: IngeWntSwatCellCycleModel
- GetDampingConstant()
: MeshBasedTissue< DIM >
, AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
- GetDampingConstantMutant()
: TissueConfig
- GetDampingConstantNormal()
: TissueConfig
- GetDataReader()
: AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDeathProbabilityInAnHour()
: RandomCellKiller< DIM >
- GetDefaultIonicModel()
: HeartConfig
- GetDeformationEnergyParameter()
: TissueConfig
- GetDimension()
: AbstractWntOdeBasedCellCycleModel
, SimpleWntCellCycleModel
- GetDirichletBCValue()
: AbstractBoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDistanceBetweenNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDistanceToEndo()
: HeartGeometryInformation< SPACE_DIM >
- GetDistanceToEpi()
: HeartGeometryInformation< SPACE_DIM >
- GetDistributedVectorFactory()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDivisionRestingSpringLength()
: TissueConfig
- GetDivisionSeparation()
: TissueConfig
- GetDomain()
: HeartConfig
- GetDt()
: TissueSimulation< DIM >
- GetEdgeLength()
: VoronoiTessellation< DIM >
- GetElapsedTime()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorBegin()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorEnd()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetExtracellularConductivities()
: HeartConfig
- GetFaceArea()
: VoronoiTessellation< DIM >
- GetFacePerimeter()
: VoronoiTessellation< DIM >
- GetFactory()
: DistributedVector
, DistributedVector::Stripe
- GetFibreLength()
: HeartConfig
- GetFibreMaxAngle()
: StreeterFibreGenerator< SPACE_DIM >
- GetG1Duration()
: AbstractCellCycleModel
- GetG2Duration()
: TissueConfig
, AbstractCellCycleModel
, StochasticWntCellCycleModel
, TysonNovakCellCycleModel
- GetGeneration()
: AbstractSimpleGenerationBasedCellCycleModel
- GetGhostNodeIndices()
: MeshBasedTissueWithGhostNodes< DIM >
- GetHeartRegion()
: HeartGeometryInformation< SPACE_DIM >
- GetHepaOneCellG1Duration()
: TissueConfig
- GetHepaOneCellHypoxicConcentration()
: TissueConfig
- GetHepaOneCellQuiescentConcentration()
: TissueConfig
- GetHigh()
: DistributedVector
, DistributedVectorFactory
- GetHypothesis()
: IngeWntSwatCellCycleModel
- GetIIonic()
: AbstractCardiacCell
, BackwardEulerFoxModel2002Modified
, BackwardEulerLuoRudyIModel1991
, DiFrancescoNoble1985OdeSystem
, FakeBathCell
, FitzHughNagumo1961OdeSystem
, FoxModel2002Modified
, HodgkinHuxleySquidAxon1952OriginalOdeSystem
, LuoRudyIModel1991OdeSystem
, Mahajan2008OdeSystem
, TenTusscher2006OdeSystem
- GetIncompleteNodeMap()
: Hdf5DataReader
- GetIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetInitialConditions()
: AbstractOdeSystem
, AbstractOdeSystemInformation
- GetIntegrand()
: AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetInterNodeSpace()
: HeartConfig
- GetIntracellularCalciumConcentration()
: AbstractCardiacCell
, BackwardEulerLuoRudyIModel1991
, LuoRudyIModel1991OdeSystem
- GetIntracellularConductivities()
: HeartConfig
- GetIntracellularStimulus()
: AbstractCardiacCell
- GetInverseJacobianForElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetIonicModelRegions()
: HeartConfig
- GetJacobianForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetKSPPreconditioner()
: HeartConfig
- GetKSPSolver()
: HeartConfig
- GetLambda()
: NhsCellularMechanicsOdeSystem
- GetLastActionPotentialDuration()
: CellProperties
- GetLastMaxUpstrokeVelocity()
: CellProperties
- GetLhsMatrix()
: LinearSystem
- GetLinearSystem()
: AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
- GetLoadMesh()
: HeartConfig
- GetLocalBoxes()
: NodeBoxCollection< DIM >
- GetLocalOwnership()
: DistributedVectorFactory
- GetLocationIndexUsingCell()
: AbstractTissue< DIM >
- GetLocationOfCellCentre()
: AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
- GetLow()
: DistributedVector
, DistributedVectorFactory
- GetMatrix()
: BidomainRhsMatrixAssembler< DIM >
, BidomainWithBathRhsMatrixAssembler< DIM >
, MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM >
- GetMatrixElement()
: LinearSystem
- GetMatureCellTargetArea()
: TissueConfig
- GetMaxNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMaxTransitGenerations()
: TissueConfig
- GetMaxUpstrokeVelocities()
: CellProperties
- GetMDuration()
: TissueConfig
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetMechanicsCutOffLength()
: TissueConfig
- GetMembraneBoundBetaCateninLevel()
: IngeWntSwatCellCycleModel
- GetMembraneSurfaceEnergyParameter()
: TissueConfig
- GetMesh()
: AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
, HoneycombMeshGenerator
- GetMeshFileBaseName()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMeshFilename()
: ArchiveLocationInfo
- GetMeshName()
: HeartConfig
- GetMeshNum()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetMessage()
: Exception
- GetMinimumGapDuration()
: TissueConfig
- GetMinNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMonodomainPde()
: MonodomainProblem< ELEM_DIM, SPACE_DIM >
- GetMutationState()
: TissueCell
- GetMyRank()
: PetscTools
- GetNearestElementIndex()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeumannBCValue()
: BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetNewIndex()
: NodeMap
- GetNextEdge()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextEdgeData()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextElementData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextFaceData()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextLineFromStream()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextNode()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextTime()
: TimeStepper
- GetNextTimeStep()
: TimeStepper
- GetNode()
: NodeBasedTissue< DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractTissue< DIM >
, MeshBasedTissue< DIM >
- GetNodeA()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, MeshBasedTissue< DIM >::SpringIterator
- GetNodeB()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, MeshBasedTissue< DIM >::SpringIterator
- GetNodeBoxCollection()
: NodeBasedTissue< DIM >
- GetNodeCorrespondingToCell()
: AbstractCellCentreBasedTissue< DIM >
- GetNodeGlobalIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeLocation()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, TissueSimulation< DIM >
- GetNodesAtSurface()
: HeartGeometryInformation< SPACE_DIM >
- GetNodesByComponentValue()
: NonlinearElasticityTools< DIM >
- GetNuclearBetaCateninLevel()
: IngeWntSwatCellCycleModel
- GetNumAllBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfCells()
: AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
- GetNumberOfParameters()
: AbstractOdeSystem
- GetNumberOfRows()
: Hdf5DataReader
- GetNumberOfStateVariables()
: AbstractOdeSystem
- GetNumberOfTimeSteps()
: OdeSolution
- GetNumBirths()
: TissueSimulation< DIM >
- GetNumBoundaryEdges()
: AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetNumBoundaryFaces()
: AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumBoxes()
: NodeBoxCollection< DIM >
- GetNumCells()
: VoronoiTessellation< DIM >
- GetNumContainingElements()
: Node< SPACE_DIM >
- GetNumDeaths()
: TissueSimulation< DIM >
- GetNumEdges()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElementAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
, QuadraturePointsGroup< DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElementsFromFile()
: AbstractConductivityTensors< SPACE_DIM >
- GetNumFaceAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumFaces()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VoronoiCell
, VoronoiTessellation< DIM >
- GetNumIterations()
: LinearSystem
- GetNumLocalElements()
: ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalNodes()
: ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumNewtonIterations()
: AbstractNonlinearElasticityAssembler< DIM >
- GetNumNodes()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTissue< DIM >
, MeshBasedTissue< DIM >
, NodeBasedTissue< DIM >
, ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumProcs()
: PetscTools
- GetNumQuadPoints()
: GaussianQuadratureRule< ELEM_DIM >
- GetNumQuadPointsPerElement()
: QuadraturePointsGroup< DIM >
- GetNumRealCells()
: AbstractTissue< DIM >
- GetNumSlowValues()
: AbstractCardiacCell
- GetNumVertices()
: QuadraticMesh< DIM >
, Face< DIM >
, VoronoiTessellation< DIM >
- GetOdeStopTime()
: AbstractOdeBasedCellCycleModel
, AbstractWntOdeBasedCellCycleModel
, TysonNovakCellCycleModel
- GetOdeTimeStep()
: HeartConfig
- GetOutputCellAges()
: TissueConfig
- GetOutputCellAncestors()
: TissueConfig
- GetOutputCellAreas()
: TissueConfig
- GetOutputCellCyclePhases()
: TissueConfig
- GetOutputCellIdData()
: TissueConfig
- GetOutputCellMutationStates()
: TissueConfig
- GetOutputCellTypes()
: TissueConfig
- GetOutputCellVariables()
: TissueConfig
- GetOutputDirectory()
: AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
, TissueSimulation< DIM >
, HeartConfig
, ColumnDataWriter
- GetOutputDirectoryFullPath()
: OutputFileHandler
- GetOutputFilenamePrefix()
: HeartConfig
- GetOutputTissueAreas()
: TissueConfig
- GetOutputVoronoiData()
: TissueConfig
- GetOwnership()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetOwnershipRange()
: LinearSystem
- GetParameter()
: AbstractOdeSystem
- GetPde()
: AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetPdeTimeStep()
: HeartConfig
- GetPeakPotentials()
: CellProperties
- GetPerimeter()
: Face< DIM >
- GetPoint()
: Node< SPACE_DIM >
- GetPrintingTimeStep()
: HeartConfig
- GetProblemSize()
: DistributedVectorFactory
- GetProcessUniqueFilePath()
: ArchiveLocationInfo
- GetProteinConcentrations()
: AbstractOdeBasedCellCycleModel
- GetQuadratureRule()
: ImplicitCardiacMechanicsAssembler< DIM >
- GetRadiusVectorForOneElement()
: PapillaryFibreCalculator
- GetRadiusVectors()
: PapillaryFibreCalculator
- GetRawDataFromFile()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetRegion()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetRelativeTolerance()
: HeartConfig
- GetRestingPotentials()
: CellProperties
- GetRhsVector()
: LinearSystem
- GetRhsVectorElement()
: LinearSystem
- GetSDuration()
: TissueConfig
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetSG2MDuration()
: TissueConfig
- GetSheetDimensions()
: HeartConfig
- GetSimulationDuration()
: HeartConfig
- GetSize()
: LinearSystem
- GetSlabDimensions()
: HeartConfig
- GetSloughSides()
: SloughingCellKiller< DIM >
- GetSlowValues()
: AbstractCardiacCell
- GetSolution()
: AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolutionDistributedVector()
: AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolver()
: AbstractCardiacCell
- GetSpaceDimension()
: HeartConfig
- GetSpaceStep()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetSpringStiffness()
: TissueConfig
- GetStartOfApoptosisTime()
: TissueCell
- GetStateVariableNumberByName()
: AbstractOdeSystem
, AbstractOdeSystemInformation
- GetStateVariableUnitsByNumber()
: AbstractOdeSystem
, AbstractOdeSystemInformation
- GetStateVariableValueByNumber()
: AbstractOdeSystem
- GetStemCellG1Duration()
: TissueConfig
- GetStiffnessMatrixGlobalIndices()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralElement< 0, SPACE_DIM >
- GetStimuli()
: HeartConfig
- GetStimulus()
: AbstractCardiacCell
, RegularStimulus
, ZeroStimulus
, AbstractStimulusFunction
, SimpleStimulus
, MultiStimulus
- GetStimulusFunction()
: AbstractCardiacCell
- GetStoppingTime()
: AbstractIvpOdeSolver
- GetSurfaceArea()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaToVolumeRatio()
: HeartConfig
- GetSymmetricDivisionProbability()
: TissueConfig
- GetSystemInformation()
: AbstractOdeSystem
- GetSystemSize()
: BackwardEulerIvpOdeSolver
- GetTime()
: PdeSimulationTime
, SimulationTime
, TimeStepper
- GetTimeAtLastMaxUpstrokeVelocity()
: CellProperties
- GetTimesAtMaxUpstrokeVelocity()
: CellProperties
- GetTimeStep()
: SimulationTime
- GetTimeStepsElapsed()
: SimulationTime
, TimeStepper
- GetTissue()
: AbstractCellKiller< SPACE_DIM >
- GetTokensAtNextLine()
: AbstractConductivityTensors< SPACE_DIM >
- GetTopOfLinearWntConcentration()
: TissueConfig
- GetTotalNumberOfTimeSteps()
: SimulationTime
- GetTotalNumQuadPoints()
: ImplicitCardiacMechanicsAssembler< DIM >
- GetTransitCellG1Duration()
: TissueConfig
- GetType()
: WntConcentration< DIM >
- GetTypicalStemCellCycleTime()
: WntCellCycleModelCellsGenerator< DIM >
, TysonNovakCellCycleModelCellsGenerator< DIM >
, IngeWntSwatCellCycleModelCellsGenerator< DIM >
, AbstractCellsGenerator< DIM >
, SimpleWntCellCycleModelCellsGenerator< DIM >
, FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
, StochasticWntCellCycleModelCellsGenerator< DIM >
, StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
- GetTypicalTransitCellCycleTime()
: StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
, IngeWntSwatCellCycleModelCellsGenerator< DIM >
, AbstractCellsGenerator< DIM >
, SimpleWntCellCycleModelCellsGenerator< DIM >
, WntCellCycleModelCellsGenerator< DIM >
, StochasticWntCellCycleModelCellsGenerator< DIM >
, FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
, TysonNovakCellCycleModelCellsGenerator< DIM >
- GetUnit()
: Hdf5DataReader
- GetUnlimitedDimensionValues()
: ColumnDataReader
, Hdf5DataReader
- GetUpstrokeTimeMaps()
: HeartConfig
- GetUseAbsoluteTolerance()
: HeartConfig
- GetUseAnalyticJacobian()
: AbstractOdeSystem
- GetUseRelativeTolerance()
: HeartConfig
- GetValue()
: CellwiseData< DIM >
, StimulusBoundaryCondition< SPACE_DIM >
, AbstractBoundaryCondition< SPACE_DIM >
, FunctionalBoundaryCondition< SPACE_DIM >
, ConstBoundaryCondition< SPACE_DIM >
- GetValues()
: ColumnDataReader
, AbstractDataReader
, ColumnDataReader
, AbstractDataReader
- GetVariableAtIndex()
: OdeSolution
- GetVariableNames()
: Hdf5DataReader
- GetVariableOverNodes()
: Hdf5DataReader
- GetVariableOverTime()
: Hdf5DataReader
- GetVectorFromAtoB()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
- GetVertex()
: VertexAndAngle< DIM >
, VoronoiTessellation< DIM >
- GetVertices()
: Face< DIM >
- GetVoltage()
: AbstractCardiacCell
- GetVoltageIndex()
: AbstractCardiacCell
- GetVolume()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeight()
: GaussianQuadratureRule< ELEM_DIM >
- GetWeightedDirectionForBoundaryElement()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeightedDirectionForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWhetherCryptSectionCellsAreLabelled()
: AbstractCryptStatistics
- GetWidth()
: Cylindrical2dMesh
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, CuboidMeshConstructor< DIM >
- GetWidthExtremes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetWntChemotaxisStrength()
: TissueConfig
- GetWntGradient()
: WntConcentration< DIM >
- GetWntLevel()
: AbstractWntOdeBasedCellCycleModel
, WntConcentration< DIM >
, SimpleWntCellCycleModel
, WntConcentration< DIM >
- GetWntStemThreshold()
: TissueConfig
- GetWntTransitThreshold()
: TissueConfig
- GetWntType()
: SimpleWntCellCycleModel
- GetWriteTissueAreas()
: MeshBasedTissue< DIM >
- GetWriteVoronoiData()
: MeshBasedTissue< DIM >
- GetZeroedAlpha()
: PolynomialMaterialLaw3d
- GetZeroStrainPressure()
: AbstractIncompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, PoleZeroMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GiveUpConvergence()
: OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- Global
: DistributedVector::Iterator