Chaste: Class Members

Here is a list of all documented class members with links to the class documentation for each member:

- m -

m128o4275 : RungeKuttaFehlbergIvpOdeSolver
m12o13 : RungeKuttaFehlbergIvpOdeSolver
m1408o2565 : RungeKuttaFehlbergIvpOdeSolver
m1859o4104 : RungeKuttaFehlbergIvpOdeSolver
m1932o2197 : RungeKuttaFehlbergIvpOdeSolver
m1o360 : RungeKuttaFehlbergIvpOdeSolver
m2197o4104 : RungeKuttaFehlbergIvpOdeSolver
m2197o75240 : RungeKuttaFehlbergIvpOdeSolver
m25o216 : RungeKuttaFehlbergIvpOdeSolver
m2o55 : RungeKuttaFehlbergIvpOdeSolver
m3544o2565 : RungeKuttaFehlbergIvpOdeSolver
m3680o513 : RungeKuttaFehlbergIvpOdeSolver
m439o216 : RungeKuttaFehlbergIvpOdeSolver
m7200o2197 : RungeKuttaFehlbergIvpOdeSolver
m7296o2197 : RungeKuttaFehlbergIvpOdeSolver
m845o4104 : RungeKuttaFehlbergIvpOdeSolver
m8o27 : RungeKuttaFehlbergIvpOdeSolver
mA : NhsCellularMechanicsOdeSystem , ExponentialMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
mA1 : NhsCellularMechanicsOdeSystem
mA2 : NhsCellularMechanicsOdeSystem
ma2d : WntCellCycleOdeSystem
mA3 : NhsCellularMechanicsOdeSystem
ma3d : WntCellCycleOdeSystem
ma4d : WntCellCycleOdeSystem
ma5d : WntCellCycleOdeSystem
mActiveTensionInitialGuess : NhsSystemWithImplicitSolver
mActiveTensionSolution : NhsSystemWithImplicitSolver
mad : WntCellCycleOdeSystem , IngeWntSwatCellCycleOdeSystem
mAddedNodes : MutableMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedTissue< DIM >
Mahajan2008OdeSystem() : Mahajan2008OdeSystem
Make2dPeriodicCryptMesh() : HoneycombMeshGenerator
mAllocatedMaterialLawMemory : ImplicitCardiacMechanicsAssembler< DIM >
mAllocatedMemory : CellwiseData< DIM >
mAllocatedMemoryForForceCollection : TissueSimulation< DIM >
mAllocatedMemoryForMesh : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mAlpha : FitzHughNagumo1961OdeSystem , PolynomialMaterialLaw3d
mAlpha0 : NhsCellularMechanicsOdeSystem
mAlpha1 : NhsCellularMechanicsOdeSystem
mAlpha2 : NhsCellularMechanicsOdeSystem
mAlpha3 : NhsCellularMechanicsOdeSystem
mAlphaR1 : NhsCellularMechanicsOdeSystem
mAlphaR2 : NhsCellularMechanicsOdeSystem
mAmMaster : OutputFileHandler , ParallelColumnDataWriter
mAncestor : TissueCell
mAncillaryFilename : ColumnDataReader
mAncillaryRowStartPosition : ColumnDataWriter
mAncillaryRowWidth : ColumnDataWriter
mAngle : VertexAndAngle< DIM >
mAnyNonZeroNeumannConditionsForUnknown : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mApoptosisTime : TissueConfig
mApoptoticSpringCompressionStiffness : TissueConfig
mApoptoticSpringTensionStiffness : TissueConfig
mArchiveKSP : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mAreaBasedDampingConstantParameter : TissueConfig
mAreActive : Electrodes< DIM >
MarkAsDeleted() : BoundaryElement< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM > , AbstractElement< ELEMENT_DIM, SPACE_DIM >
MarkSpring() : MeshBasedTissue< DIM >
MASTER_RANK : PetscTools
Max() : CardiacElectroMechanicsProblem< DIM >
MAX_DATASET_RANK : Hdf5DataReader
MAX_NEWTON_ABS_TOL : AbstractNonlinearElasticityAssembler< DIM >
MaxLoggingLevel() : LogFile
mB : ExponentialMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
mBaseName : Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , InventorVoronoiWriter
mBeta0 : NhsCellularMechanicsOdeSystem
mBeta1 : NhsCellularMechanicsOdeSystem
mBetaCatResultsFile : CryptSimulation2d
mBetaCatSpringScaler : TissueConfig
mBirthTime : AbstractCellCycleModel
mBodyForce : AbstractNonlinearElasticityAssembler< DIM >
mBottom : Cylindrical2dMesh , HoneycombMeshGenerator
mBottomHaloNodes : Cylindrical2dMesh
mBoundaryElementIndices : Node< SPACE_DIM >
mBoundaryElementJacobianDeterminants : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryElements : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , NonlinearElasticityAssembler< DIM >
mBoundaryElementsMapping : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryElementWeightedDirections : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mBoundaryFaceData : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mBoundaryFacesRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mBoundaryNodes : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mBoxes : NodeBoxCollection< DIM >
mC1 : MooneyRivlinMaterialLaw< DIM >
mC2 : MooneyRivlinMaterialLaw< DIM >
mCalcium50ref : NhsCellularMechanicsOdeSystem
mCalciumI : NhsCellularMechanicsOdeSystem
mCalciumTrop50 : NhsCellularMechanicsOdeSystem
mCalciumTroponinMax : NhsCellularMechanicsOdeSystem
mCallChaste2Meshalyzer : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mCallCount : MockEulerIvpOdeSolver
mCanDivide : TissueCell
mCellBoundaryAdhesionEnergyParameter : TissueConfig
mCellCellAdhesionEnergyParameter : TissueConfig
mCellCentre : VoronoiCell
mCellCyclePhaseCount : AbstractTissue< DIM >
mCellId : TissueCell
mCellIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mCellIter : AbstractTissue< DIM >::Iterator
mCellKillers : TissueSimulation< DIM >
mCellLocationMap : AbstractTissue< DIM >
mCellMechSystems : ImplicitCardiacMechanicsAssembler< DIM >
mCellMutationStateCount : AbstractTissue< DIM >
mCells : AbstractTissue< DIM >
mCellsDistributed : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mCellType : TissueCell
mCellTypeCount : AbstractTissue< DIM >
mCleanDirectory : Hdf5DataWriter
mConcentrated : ParallelColumnDataWriter
mConstantConductivities : AbstractConductivityTensors< SPACE_DIM >
mConstantDataForTesting : CellwiseData< DIM >
mConstantWntValueForTesting : WntConcentration< DIM >
mCpuTime : GenericEventHandler< NUM_EVENTS, CONCRETE >
mCriticalHypoxicDuration : TissueConfig
mCryptDepth : HoneycombMeshGenerator
mCryptLength : TissueConfig
mCryptProjectionParameterA : TissueConfig
mCryptProjectionParameterB : TissueConfig
mCryptWidth : TissueConfig , HoneycombMeshGenerator
mCurrentCellCyclePhase : AbstractCellCycleModel
mCurrentSolution : AbstractNonlinearElasticityAssembler< DIM >
mCurrentSolutionOrGuessReplicated : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
mCurrentStateVars : NhsSystemWithImplicitSolver
mCurrentTime : ImplicitCardiacMechanicsAssembler< DIM > , SimulationTime
mCurrentTimeStep : Hdf5DataWriter
mCutOffLength : NodeBoxCollection< DIM >
mCycB_threshold : TysonNovak2001OdeSystem
mCycleLengths : CellProperties
mCylindrical : HoneycombMeshGenerator
mDa : IngeWntSwatCellCycleOdeSystem
mDampingConstantMutant : TissueConfig
mDampingConstantNormal : TissueConfig
mData : ReplicatableVector , FourthOrderTensor< DIM > , CellwiseData< DIM >
mDataFile : AbstractConductivityTensors< SPACE_DIM >
mDataFilename : ColumnDataReader
mDataFixedDimensionSize : Hdf5DataWriter
mDatasetDims : Hdf5DataWriter
mDatasetId : Hdf5DataWriter
mDc : IngeWntSwatCellCycleOdeSystem
mDca : IngeWntSwatCellCycleOdeSystem
mDct : IngeWntSwatCellCycleOdeSystem
mDd : IngeWntSwatCellCycleOdeSystem
mDdx : IngeWntSwatCellCycleOdeSystem
mDeathTime : TissueCell
mDeformationEnergyParameter : TissueConfig
mDeformationOutputDirectory : CardiacElectroMechanicsProblem< DIM >
mDeformedPosition : AbstractNonlinearElasticityAssembler< DIM >
mDeletedBoundaryElementIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM >
mDeletedElementIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM >
mDeletedNodeIndices : MutableMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedTissue< DIM >
mDeleteMesh : MeshBasedTissue< DIM >
mDeleteNodes : NodeBasedTissue< DIM >
mDeleteTissue : TissueSimulation< DIM >
mDensity : AbstractNonlinearElasticityAssembler< DIM >
mDestroyMatAndVec : LinearSystem
mDimCubed : FourthOrderTensor< DIM >
mDimension : AbstractWntOdeBasedCellCycleModel , SimpleWntCellCycleModel
mDimSqd : FourthOrderTensor< DIM >
mDimToFour : FourthOrderTensor< DIM >
mDirectory : OutputFileHandler , Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter
mDirichIterator : AbstractBoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mDirichletBoundaryConditionsVector : LinearSystem
mDirPath : ArchiveLocationInfo
mDistMapEndocardium : HeartGeometryInformation< SPACE_DIM >
mDistMapEpicardium : HeartGeometryInformation< SPACE_DIM >
mDistMapLeftVentricle : HeartGeometryInformation< SPACE_DIM >
mDistMapRightVentricle : HeartGeometryInformation< SPACE_DIM >
mDistributed : ReplicatableVector
mDivideTime : AbstractOdeBasedCellCycleModel
mDivisionRestingSpringLength : TissueConfig
mDivisionSeparation : TissueConfig
mDLambdaDt : NhsCellularMechanicsOdeSystem
mDoCacheReplication : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mDomainSize : NodeBoxCollection< DIM >
mDoOneCacheReplication : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mDt : AbstractCardiacCell , NhsSystemWithImplicitSolver , TimeStepper , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , IngeWntSwatCellCycleOdeSystem , TissueSimulation< DIM >
mDtInverse : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mDu : IngeWntSwatCellCycleOdeSystem
mDuration : RegularStimulus , SimpleStimulus
mDurationOfSimulation : SimulationTime
mDx : IngeWntSwatCellCycleOdeSystem
mDy : IngeWntSwatCellCycleOdeSystem
MechanicsEventType : MechanicsEventHandler
mEdgeIter : MeshBasedTissue< DIM >::SpringIterator
mEdgesVisited : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mElectricsTimeStep : CardiacElectroMechanicsProblem< DIM >
mElementAndWeightsForQuadPoints : CardiacElectroMechanicsProblem< DIM >
mElementData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mElementIndices : Node< SPACE_DIM >
mElementInverseJacobians : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementIter : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
mElementJacobianDeterminants : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementJacobians : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mElements : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementsFile : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementsMapping : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElementsRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mElementWeightedDirections : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mElemIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
membrane_C : BackwardEulerLuoRudyIModel1991 , DiFrancescoNoble1985OdeSystem , LuoRudyIModel1991OdeSystem
membrane_Cm : HodgkinHuxleySquidAxon1952OriginalOdeSystem , TenTusscher2006OdeSystem
membrane_E_R : HodgkinHuxleySquidAxon1952OriginalOdeSystem
membrane_F : BackwardEulerLuoRudyIModel1991 , LuoRudyIModel1991OdeSystem , TenTusscher2006OdeSystem
membrane_R : BackwardEulerLuoRudyIModel1991 , LuoRudyIModel1991OdeSystem , TenTusscher2006OdeSystem
membrane_T : BackwardEulerLuoRudyIModel1991 , LuoRudyIModel1991OdeSystem , TenTusscher2006OdeSystem
membrane_V_c : TenTusscher2006OdeSystem
MemfemMeshReader() : MemfemMeshReader< ELEMENT_DIM, SPACE_DIM >
mEnabled : GenericEventHandler< NUM_EVENTS, CONCRETE >
mEnd : TimeStepper
mEndoSurface : HeartGeometryInformation< SPACE_DIM >
mEndTime : SimulationTime , TissueSimulation< DIM > , CardiacElectroMechanicsProblem< DIM > , Electrodes< DIM > , ProgressReporter
mEndTimeAndNumberOfTimeStepsSet : SimulationTime
mEpiSurface : HeartGeometryInformation< SPACE_DIM >
mEpsilon : FitzHughNagumo1961OdeSystem
mError : RungeKuttaFehlbergIvpOdeSolver
MeshalyzerMeshWriter() : MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
MeshBasedTissue() : MeshBasedTissue< DIM >
MeshBasedTissueWithGhostNodes() : MeshBasedTissueWithGhostNodes< DIM >
MeshNum : AbstractUntemplatedConvergenceTester
MetisBinaryNodePartitioning() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
MetisLibraryNodePartitioning() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mExtracelluarColumnId : BidomainProblem< DIM >
mExtracellularStimulusCacheReplicated : BidomainPde< SPACE_DIM >
mFaceData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaceRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mFaces : VoronoiCell , VoronoiTessellation< DIM >
mFacesFile : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFacesRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFibreOrientationFilename : AbstractConductivityTensors< SPACE_DIM >
mFileBaseName : Hdf5ToMeshalyzerConverter
mFileExtension : ColumnDataWriter
mFileFixedDimensionSize : Hdf5DataWriter
mFileId : Hdf5DataReader , Hdf5DataWriter
mFilesBaseName : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mFileSet : LogFile
mFinishedRunningOdes : AbstractOdeBasedCellCycleModel
mFixedDimensionName : ColumnDataWriter
mFixedDimensionSize : ColumnDataWriter
mFixedDimensionUnits : ColumnDataWriter
mFixedExtracellularPotentialNodes : BidomainProblem< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mFixedNodeDisplacements : AbstractNonlinearElasticityAssembler< DIM >
mFixedNodes : CardiacElectroMechanicsProblem< DIM > , AbstractNonlinearElasticityAssembler< DIM >
mFlag : AbstractElement< ELEMENT_DIM, SPACE_DIM >
mForceCollection : TissueSimulation< DIM >
mForceUseOfNumericalJacobian : BackwardEulerIvpOdeSolver
mFunction : FunctionalBoundaryCondition< SPACE_DIM >
mG1Duration : AbstractCellCycleModel
mG2Duration : TissueConfig , StochasticWntCellCycleModel
mG2PhaseStartTime : AbstractOdeBasedCellCycleModel
mGamma : FitzHughNagumo1961OdeSystem , NhsCellularMechanicsOdeSystem
mGeneration : AbstractSimpleGenerationBasedCellCycleModel
mGhostNodeIndices : HoneycombMeshGenerator
mGroundSecondElectrode : Electrodes< DIM >
mHaloNodes : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mHaloNodesMapping : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mHasBath : BidomainProblem< DIM >
mHasBegun : GenericEventHandler< NUM_EVENTS, CONCRETE >
mHasPutVariable : ColumnDataWriter
mHasUnlimitedDimension : ColumnDataReader
mHepaOneCellG1Duration : TissueConfig
mHepaOneCellHypoxicConcentration : TissueConfig
mHepaOneCellQuiescentConcentration : TissueConfig
mHi : DistributedVector , DistributedVector::Stripe , DistributedVector::Chunk , DistributedVectorFactory , Hdf5DataWriter
mHypothesis : IngeWntSwatCellCycleOdeSystem , IngeWntSwatCellCycleModel , IngeWntSwatCellCycleModelCellsGenerator< DIM >
mIdentity : PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
mIExtracellularStimulus : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mIIntracellularStimulus : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mIionic : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mIionicCacheReplicated : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mImageToLeftOriginalNodeMap : Cylindrical2dMesh
mImageToRightOriginalNodeMap : Cylindrical2dMesh
MIN_NEWTON_ABS_TOL : AbstractNonlinearElasticityAssembler< DIM >
mIncompleteNodeIndices : Hdf5DataReader , Hdf5DataWriter
mIndex : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
mIndexFromZero : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mIndexIterator : Node< SPACE_DIM >::ContainingElementIterator , Node< SPACE_DIM >::ContainingBoundaryElementIterator
mInfoFilename : ColumnDataReader
mInitialCondition : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mInitialConditions : AbstractOdeSystemInformation
mInitialGuess : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
mInitialiseCells : TissueSimulation< DIM >
mInitialised : AbstractConductivityTensors< SPACE_DIM > , GenericEventHandler< NUM_EVENTS, CONCRETE > , AbstractOdeSystemInformation
mInitTime : LogFile
mIntracellularStimulusCacheReplicated : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mInUse : GenericEventHandler< NUM_EVENTS, CONCRETE >
mIsBoundaryNode : Node< SPACE_DIM >
mIsDataComplete : Hdf5DataReader , Hdf5DataWriter
mIsDead : TissueCell
mIsDeleted : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
mIsFixedDimensionSet : ColumnDataWriter , Hdf5DataWriter
mIsGhostNode : MeshBasedTissueWithGhostNodes< DIM >
mIsInDefineMode : ColumnDataWriter , Hdf5DataWriter
mIsInternalNode : QuadraticMesh< DIM >
mIsLogged : TissueCell
mIsParallel : ParallelColumnDataWriter
mIsUnlimitedDimensionSet : Hdf5DataReader , ColumnDataWriter , Hdf5DataWriter
mIsWatchedLocation : CardiacElectroMechanicsProblem< DIM >
mJ11d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ12d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ13d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ15 : TysonNovak2001OdeSystem
mJ16 : TysonNovak2001OdeSystem
mJ3 : TysonNovak2001OdeSystem
mJ4 : TysonNovak2001OdeSystem
mJ5 : TysonNovak2001OdeSystem
mJ61d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ62d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ63d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mJ7 : TysonNovak2001OdeSystem
mJ8 : TysonNovak2001OdeSystem
mJacobian : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
mK : PoleZeroMaterialLaw< DIM >
mk1 : RungeKuttaFehlbergIvpOdeSolver
mK1 : NhsCellularMechanicsOdeSystem , TysonNovak2001OdeSystem
mK10 : TysonNovak2001OdeSystem
mK11 : TysonNovak2001OdeSystem
mK12d : TysonNovak2001OdeSystem
mK12dd : TysonNovak2001OdeSystem
mK12ddd : TysonNovak2001OdeSystem
mK13 : TysonNovak2001OdeSystem
mK14 : TysonNovak2001OdeSystem
mK15d : TysonNovak2001OdeSystem
mK15dd : TysonNovak2001OdeSystem
mk16d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK16d : TysonNovak2001OdeSystem
mK16dd : TysonNovak2001OdeSystem
mk2 : RungeKuttaFehlbergIvpOdeSolver
mK2 : NhsCellularMechanicsOdeSystem
mk23d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK2d : TysonNovak2001OdeSystem
mk2d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK2dd : TysonNovak2001OdeSystem
mK2ddd : TysonNovak2001OdeSystem
mk3 : RungeKuttaFehlbergIvpOdeSolver
mk34d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK3d : TysonNovak2001OdeSystem
mk3d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK3dd : TysonNovak2001OdeSystem
mK4 : TysonNovak2001OdeSystem
mk4 : RungeKuttaFehlbergIvpOdeSolver
mk43d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK4d : TysonNovak2001OdeSystem
mk5 : RungeKuttaFehlbergIvpOdeSolver
mK5d : TysonNovak2001OdeSystem
mK5dd : TysonNovak2001OdeSystem
mK6 : TysonNovak2001OdeSystem
mk6 : RungeKuttaFehlbergIvpOdeSolver
mk61d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mK7 : TysonNovak2001OdeSystem
mK8 : TysonNovak2001OdeSystem
mK9 : TysonNovak2001OdeSystem
mKc : IngeWntSwatCellCycleOdeSystem
mKd : IngeWntSwatCellCycleOdeSystem
mKeq : TysonNovak2001OdeSystem
mKm1d : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mKon : NhsCellularMechanicsOdeSystem
mkpd : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mKrefoff : NhsCellularMechanicsOdeSystem
mKspIsSetup : LinearSystem
mKspSolver : LinearSystem
mKspType : LinearSystem
mKt : IngeWntSwatCellCycleOdeSystem
mKZ : NhsCellularMechanicsOdeSystem
mLambda : NhsCellularMechanicsOdeSystem , ImplicitCardiacMechanicsAssembler< DIM >
mLambdaLastTimeStep : ImplicitCardiacMechanicsAssembler< DIM >
mLastNeumannCondition : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mLastPercentage : ProgressReporter
mLastTime : AbstractOdeBasedCellCycleModel
mLayerForEachNode : HeartGeometryInformation< SPACE_DIM >
mLeftImages : Cylindrical2dMesh
mLeftOriginals : Cylindrical2dMesh
mLeftPeriodicBoundaryElementIndices : Cylindrical2dMesh
mLevel : LogFile
mLhsMatrix : LinearSystem
mLinearSolverRelativeTolerance : SimpleNewtonNonlinearSolver
mLo : DistributedVector , DistributedVector::Stripe , DistributedVector::Chunk , DistributedVectorFactory , Hdf5DataWriter
mLocalBoxes : NodeBoxCollection< DIM >
mLocation : ChastePoint< DIM > , Node< SPACE_DIM >
mLocationCellMap : AbstractTissue< DIM >
mLVSurface : HeartGeometryInformation< SPACE_DIM >
mMad : TysonNovak2001OdeSystem
mMagnitudeOfStimulus : RegularStimulus , SimpleStimulus
mMap : NodeMap
mMarkedSprings : MeshBasedTissue< DIM >
mMaterialLaws : AbstractNonlinearElasticityAssembler< DIM >
mMatNullSpace : LinearSystem
mMatrixIsAssembled : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mMatrixIsConstant : LinearSystem , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
mMatureCellTargetArea : TissueConfig
mMaxCellId : TissueCell
mMaxFaceBdyMarker : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mMaxLoggingLevel : LogFile
mMaxNodeBdyMarker : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mMaxSpatialPositions : NodeBasedTissue< DIM >
mMaxTransitGenerations : TissueConfig
mMaxUpstrokeVelocities : CellProperties
mMDuration : TissueConfig
mMechanicsCutOffLength : TissueConfig
mMechanicsTimeStep : CardiacElectroMechanicsProblem< DIM >
mMembraneSurfaceEnergyParameter : TissueConfig
mMeshChangesDuringSimulation : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mMeshFileBaseName : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mMeshFilename : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , ArchiveLocationInfo , HoneycombMeshGenerator
mMeshWidth : QuarterStimulusCellFactory< CELL, DIM > , AbstractUntemplatedConvergenceTester , CuboidMeshConstructor< DIM >
mMessage : Exception
mMetisPartitioning : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mMinAndMaxValues : NodeBox< DIM >
mMinimumGapDuration : TissueConfig
mMinSpatialPositions : NodeBasedTissue< DIM >
mMstar : TysonNovak2001OdeSystem
mMu : TysonNovak2001OdeSystem
mMutantMutantMultiplier : LinearSpringWithVariableSpringConstantsForce< DIM >
mMutationState : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem , TissueCell
mN : NhsCellularMechanicsOdeSystem , PolynomialMaterialLaw3d , TysonNovak2001OdeSystem
mNeedAdvanceAlongUnlimitedDimension : ColumnDataWriter
mNeedExtend : Hdf5DataWriter
mNextTime : ImplicitCardiacMechanicsAssembler< DIM > , TimeStepper
mNhsOdeTimeStep : CardiacElectroMechanicsProblem< DIM >
mNoBirth : TissueSimulation< DIM >
mNodeALocalIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mNodeBLocalIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mNodeColumnId : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mNodeData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mNodeIndex : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
mNodeIter : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
mNodePairs : NodeBasedTissue< DIM >
mNodeRawData : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodes : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedTissue< DIM > , AbstractElement< ELEMENT_DIM, SPACE_DIM >
mNodesContained : NodeBox< DIM >
mNodesFile : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesMapping : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mNodesPerBoundaryElement : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesPerElement : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesPermutation : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
mNodesPerProcessorFilename : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mNodesRead : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNodesToOutput : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mNoElectricsOutput : CardiacElectroMechanicsProblem< DIM >
mNonZerosUsed : LinearSystem
mNormalMutantMultiplier : LinearSpringWithVariableSpringConstantsForce< DIM >
mNr : NhsCellularMechanicsOdeSystem
mNullSpaceCreated : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mNumberOfNodes : PostProcessingWriter
mNumberOfStateVariables : AbstractOdeSystem
mNumberOfSurfacesProvided : HeartGeometryInformation< SPACE_DIM >
mNumberOfTimeSteps : OdeSolution
mNumberOfVariables : CellwiseData< DIM >
mNumberOwned : Hdf5DataWriter
mNumberTimesteps : Hdf5DataReader
mNumBirths : TissueSimulation< DIM >
mNumBoxesEachDirection : NodeBoxCollection< DIM >
mNumCellLength : HoneycombMeshGenerator
mNumCellWidth : HoneycombMeshGenerator
mNumDeaths : TissueSimulation< DIM >
mNumDofs : AbstractNonlinearElasticityAssembler< DIM >
mNumElecTimestepsPerMechTimestep : CardiacElectroMechanicsProblem< DIM >
mNumElementAttributes : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumElementNodes : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumElements : AbstractConductivityTensors< SPACE_DIM > , QuadraturePointsGroup< DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumericalJacobianEpsilon : BackwardEulerIvpOdeSolver
mNumFaceAttributes : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumFaces : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumFixedDimensions : ColumnDataReader
mNumNewtonIterations : AbstractNonlinearElasticityAssembler< DIM >
mNumNodeAttributes : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumNodes : DistanceMapCalculator< SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mNumProcessors : PetscTools
mNumQuadPoints : GaussianQuadratureRule< ELEM_DIM >
mNumQuadPointsPerElement : QuadraturePointsGroup< DIM >
mNumVariables : ColumnDataReader
mNumVertices : QuadraticMesh< DIM >
MockEulerIvpOdeSolver() : MockEulerIvpOdeSolver
mOdeSystems : CombinedOdeSystem
mOdeTimestep : ImplicitCardiacMechanicsAssembler< DIM >
mOffset : DistributedVector::Chunk , Hdf5DataWriter
mOffsets : CombinedOdeSystem
MonodomainDg0Assembler() : MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
MonodomainMatrixBasedAssembler() : MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
MonodomainPde() : MonodomainPde< ELEM_DIM, SPACE_DIM >
MonodomainProblem() : MonodomainProblem< ELEM_DIM, SPACE_DIM >
MonodomainRhsMatrixAssembler() : MonodomainRhsMatrixAssembler< ELEM_DIM, SPACE_DIM >
mOnsets : CellProperties
MooneyRivlinMaterialLaw() : MooneyRivlinMaterialLaw< DIM >
mOrderOfBoundaryElements : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mOrderOfElements : TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
mOrientations : VoronoiCell
mOutputCellAges : TissueConfig
mOutputCellAncestors : TissueConfig
mOutputCellAreas : TissueConfig
mOutputCellCyclePhases : TissueConfig
mOutputCellIdData : TissueConfig
mOutputCellMutationStates : TissueConfig
mOutputCellTypes : TissueConfig
mOutputCellVariables : TissueConfig
mOutputDirectory : CardiacElectroMechanicsProblem< DIM > , AbstractNonlinearElasticityAssembler< DIM > , TissueSimulation< DIM >
mOutputFileHandler : ColumnDataWriter
mOutputTissueAreas : TissueConfig
mOutputVoronoiData : TissueConfig
MoveMergeNode() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
mOwnership : AbstractElement< ELEMENT_DIM, SPACE_DIM >
mOwnershipRangeHi : LinearSystem
mOwnershipRangeLo : LinearSystem
mParameterNames : AbstractOdeSystemInformation
mParameters : AbstractOdeSystem
mParameterUnits : AbstractOdeSystemInformation
mpAssembler : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
mpBidomainPde : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainProblem< DIM >
mpBidomainRhsMatrixAssembler : BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
mpBidomainWithBathRhsMatrixAssembler : BidomainWithBathMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
mpBlockDiagonalPC : LinearSystem
mpBodyForceFunction : AbstractNonlinearElasticityAssembler< DIM >
mpBoundaryConditions : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpBoundaryConditionsContainer : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , Electrodes< DIM >
mpBoundaryFaceIterator : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpBoundaryQuadratureRule : NonlinearElasticityAssembler< DIM >
mPc : IngeWntSwatCellCycleOdeSystem
mpCalculator : PostProcessingWriter
mpCardiacMechAssembler : CardiacElectroMechanicsProblem< DIM >
mpCardiacPde : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mPCContext : PCBlockDiagonal
mpCell : AbstractCellCycleModel
mpCellAgesFile : AbstractTissue< DIM >
mpCellAncestorsFile : AbstractTissue< DIM >
mpCellAreasFile : MeshBasedTissue< DIM >
mpCellCycleModel : TissueCell
mpCellCyclePhasesFile : AbstractTissue< DIM >
mpCellFactory : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpCellIdFile : AbstractTissue< DIM >
mpCellMutationStatesFile : AbstractTissue< DIM >
mpCellTypesFile : AbstractTissue< DIM >
mpCellVariablesFile : AbstractTissue< DIM >
mpConfig : AbstractCardiacPde< ELEM_DIM, SPACE_DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , TissueSimulation< DIM >
mPcType : LinearSystem
mpCurrentAncillaryFile : ColumnDataWriter
mpCurrentOutputFile : ColumnDataWriter
mpDataReader : PropagationPropertiesCalculator
mpDefaultBoundaryConditionsContainer : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpDefaultParameters : HeartConfig
mpDirichletMap : AbstractBoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpDistributedVectorFactory : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mPeakValues : CellProperties
mpElectricsMesh : CardiacElectroMechanicsProblem< DIM >
mpElectrodes : BidomainProblem< DIM >
mpElementFile : MeshBasedTissue< DIM >
mpElementIterator : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mpEllipticPde : SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE >
mPeriod : RegularStimulus
mPetscIsInitialised : PetscTools
mPetscPCObject : PCBlockDiagonal
mPetscStatusKnown : DistributedVectorFactory
mpExtracellularConductivityTensors : BidomainPde< SPACE_DIM >
mpFaceIterator : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
mpFactory : DistributedVector::Stripe , DistributedVector
mpFactoryWasUnarchived : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mpFakeCell : AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
mpFile : ProgressReporter
mpFixedDimensionVariable : ColumnDataWriter
mpGeometryInfo : StreeterFibreGenerator< SPACE_DIM >
mphi_i : WntCellCycleOdeSystem , IngeWntSwatCellCycleOdeSystem
mphi_j : WntCellCycleOdeSystem , IngeWntSwatCellCycleOdeSystem
mphi_p : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mphi_r : WntCellCycleOdeSystem , IngeWntSwatCellCycleOdeSystem
mPhiE2F1 : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
mpInstance : WntConcentration< DIM > , LogFile , HeartConfig , OdeSystemInformation< ODE_SYSTEM > , SimulationTime , TissueConfig , CellwiseData< DIM > , PetscArguments , RandomNumberGenerator
mpIntracellularConductivityTensors : AbstractCardiacPde< ELEM_DIM, SPACE_DIM >
mpIntracellularStimulus : AbstractCardiacCell
mpLinearSystem : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractNonlinearElasticityAssembler< DIM >
mpMatrixForMatrixBasedRhsAssembly : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mpMechanicsMesh : CardiacElectroMechanicsProblem< DIM >
mpMesh : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM > , HoneycombMeshGenerator
mpMonodomainPde : MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , MonodomainProblem< ELEM_DIM, SPACE_DIM >
mpMonodomainProblem : CardiacElectroMechanicsProblem< DIM >
mpMonodomainRhsMatrixAssembler : MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
mpNeumannMap : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpNodeBoxCollection : NodeBasedTissue< DIM >
mpNodeIterator : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpNonConstantConductivities : AbstractConductivityTensors< SPACE_DIM >
mpNonlinearEllipticPde : SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
mpOdeSolver : AbstractCardiacCell
mpOdeSystem : AbstractOdeBasedCellCycleModel
mPoints : GaussianQuadratureRule< ELEM_DIM >
mpOutputFileHandler : InventorVoronoiWriter , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mpOutStream : LogFile
mpParabolicPde : SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE >
mpPreconditionMatrixLinearSystem : AbstractNonlinearElasticityAssembler< DIM >
mpQuadMesh : NonlinearElasticityAssembler< DIM >
mpQuadratureRule : NonlinearElasticityAssembler< DIM >
mpQuadRule : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
mpRandomGenerator : TissueSimulation< DIM >
mpReader : Hdf5ToMeshalyzerConverter
mPrecision : LogFile
mPressures : AbstractNonlinearElasticityAssembler< DIM >
mPrintOutput : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mProbabilityOfDeathInAnHour : RandomCellKiller< DIM >
mProblemSize : DistributedVector , DistributedVectorFactory
mpSetupFile : TissueSimulation< DIM >
mpSolver : AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM > , AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
mpStaticCastTissue : CryptSimulation2d
mpStimulus : QuarterStimulusCellFactory< CELL, DIM > , PlaneStimulusCellFactory< CELL, ELEM_DIM, SPACE_DIM > , StimulusBoundaryCondition< SPACE_DIM >
mpSurfaceQuadRule : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
mpSystemInfo : AbstractOdeSystem
mpTissue : AbstractCellKiller< SPACE_DIM > , WntConcentration< DIM > , CellwiseData< DIM >
mpTissueAreasFile : MeshBasedTissue< DIM >
mpTissueConfig : WntConcentration< DIM >
mpTractionBoundaryConditionFunction : AbstractNonlinearElasticityAssembler< DIM >
mPu : IngeWntSwatCellCycleOdeSystem
mpUnlimitedDimensionVariable : ColumnDataWriter
mpUserParameters : HeartConfig
mpVec : DistributedVector::Chunk , DistributedVector::Stripe , DistributedVector
mpVertex : VertexAndAngle< DIM >
mpVizCellTypesFile : AbstractTissue< DIM >
mpVizNodesFile : AbstractTissue< DIM >
mpVoronoiFile : MeshBasedTissue< DIM >
mpVoronoiTessellation : MeshBasedTissue< DIM >
mpWatchedLocationFile : CardiacElectroMechanicsProblem< DIM >
mpWriter : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpZeroBoundaryCondition : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mpZeroStimulus : AbstractCardiacCellFactory< ELEM_DIM, SPACE_DIM >
mRadiusVectors : PapillaryFibreCalculator
mRank : PetscTools
mrCrypt : AbstractCryptStatistics
mReadyToDivide : AbstractCellCycleModel
mRegion : Node< SPACE_DIM > , AbstractElement< ELEMENT_DIM, SPACE_DIM >
mReplicated : ReplicatableVector
mResidual : BackwardEulerIvpOdeSolver , CardiacNewtonSolver< SIZE >
mRestingValues : CellProperties
mRhsVector : LinearSystem
mRightImages : Cylindrical2dMesh
mRightOriginals : Cylindrical2dMesh
mRightPeriodicBoundaryElementIndices : Cylindrical2dMesh
mrMesh : DistanceMapCalculator< SPACE_DIM > , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator , PapillaryFibreCalculator , MeshBasedTissue< DIM > , HeartGeometryInformation< SPACE_DIM > , AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator , VoronoiTessellation< DIM > , StreeterFibreGenerator< SPACE_DIM >
mRowForAverageOfPhiZeroed : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainProblem< DIM >
mRowStartPosition : ColumnDataWriter
mRowWidth : ColumnDataWriter
mrPointA : ChasteCuboid
mrPointB : ChasteCuboid
mrTime : CellProperties
mrTissue : TissueSimulation< DIM > , MeshBasedTissue< DIM >::SpringIterator , AbstractTissue< DIM >::Iterator
mrVectorFactory : Hdf5DataWriter
mrVoltage : CellProperties
mRVSurface : HeartGeometryInformation< SPACE_DIM >
mSa : IngeWntSwatCellCycleOdeSystem
mSamplingTimestepMultiple : TissueSimulation< DIM >
mSc : IngeWntSwatCellCycleOdeSystem
mSca : IngeWntSwatCellCycleOdeSystem
mScaleFactorGkr : TenTusscher2006OdeSystem , Mahajan2008OdeSystem
mScaleFactorGks : TenTusscher2006OdeSystem , Mahajan2008OdeSystem
mScaleFactorIto : Mahajan2008OdeSystem , TenTusscher2006OdeSystem
mSct : IngeWntSwatCellCycleOdeSystem
mSd : IngeWntSwatCellCycleOdeSystem
mSDuration : TissueConfig
mSeed : RandomNumberGenerator
mSetVoltageDerivativeToZero : AbstractCardiacCell
mSimulationOutputDirectory : TissueSimulation< DIM >
msInstances : CombinedOdeSystemInformation
mSize : LinearSystem
mSizeMultiplier : DistributedVector
mSizeOfOdeSystem : BackwardEulerIvpOdeSolver
mSkipDeletedElements : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
mSkipDeletedNodes : AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
mSloughSides : SloughingCellKiller< DIM >
mSmoothedStructureTensors : PapillaryFibreCalculator
mSolution : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mSolutionReplicated : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mSolutions : OdeSolution
mSourceTerm : MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
mSpringStiffness : TissueConfig
mSpringsVisited : MeshBasedTissue< DIM >::SpringIterator
msSolver : AbstractWntOdeBasedCellCycleModel , TysonNovakCellCycleModel
mSt : IngeWntSwatCellCycleOdeSystem
mStart : TimeStepper
mStartOfApoptosisTime : TissueCell
mStartTime : ProgressReporter , SimulationTime , RegularStimulus
mStartTimeSet : SimulationTime
mStateVariables : AbstractOdeSystem
mStemCellG1Duration : TissueConfig
mStimuli : MultiStimulus
mStoppingEventOccurred : AbstractIvpOdeSolver
mStoppingTime : AbstractIvpOdeSolver
mStopTime : RegularStimulus
mStride : AbstractCardiacPde< ELEM_DIM, SPACE_DIM > , DistributedVector::Stripe
mStripe : DistributedVector::Stripe
mStructureTensors : PapillaryFibreCalculator
mSurfaceTractions : AbstractNonlinearElasticityAssembler< DIM >
mSx : IngeWntSwatCellCycleOdeSystem
mSy : IngeWntSwatCellCycleOdeSystem
mSymmetricDivisionProbability : TissueConfig
mTempStoredStateVariables : NhsSystemWithImplicitSolver
mTend : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTensors : AbstractConductivityTensors< SPACE_DIM >
mTestDampingValues : SimpleNewtonNonlinearSolver
mThreshold : CellProperties
mTime : TimeStepper , PdeSimulationTime
mTimeColumnId : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mTimeDatasetId : Hdf5DataReader , Hdf5DataWriter
mTimeOfStimulus : SimpleStimulus
mTimes : OdeSolution
mTimesAtMaxUpstrokeVelocity : CellProperties
mTimesCalled : RandomNumberGenerator
mTimesSet : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTimeStep : TimeStepper
mTimeStepsElapsed : SimulationTime
mTissueContainsMesh : AbstractTissue< DIM >
mToAll : ReplicatableVector
mTolerance : SimpleNewtonNonlinearSolver , LinearSystem , NhsSystemWithImplicitSolver
mToMaster : ParallelColumnDataWriter
mTop : HoneycombMeshGenerator , Cylindrical2dMesh
mTopHaloNodes : Cylindrical2dMesh
mTopOfLinearWntConcentration : TissueConfig
mTotalNumBoundaryElements : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalNumElements : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalNumNodes : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
mTotalQuadPoints : ImplicitCardiacMechanicsAssembler< DIM >
mTotalTimeStepsInSimulation : SimulationTime
mTransitCellG1Duration : TissueConfig
mTref : NhsCellularMechanicsOdeSystem
mTstart : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mTypeSet : WntConcentration< DIM >
mUndergoingApoptosis : TissueCell
mUnlimitedDimensionName : Hdf5DataWriter , ColumnDataWriter
mUnlimitedDimensionPosition : ColumnDataWriter
mUnlimitedDimensionUnit : Hdf5DataWriter
mUnlimitedDimensionUnits : ColumnDataWriter
mUpdate : BackwardEulerIvpOdeSolver , CardiacNewtonSolver< SIZE >
mUpdateTissue : TissueSimulation< DIM >
mUseAbsoluteTolerance : LinearSystem
mUseAnalyticalJacobian : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
mUseAnalyticJacobian : AbstractOdeSystem
mUseApoptoticSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseAreaBasedDampingConstant : MeshBasedTissue< DIM >
mUseBCatSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseCellTypeDependentG1Duration : SimpleWntCellCycleModel
mUseConstantDataForTesting : CellwiseData< DIM >
mUseConstantWntValueForTesting : WntConcentration< DIM >
mUseCutoffPoint : AbstractTwoBodyInteractionForce< DIM >
mUseEdgeBasedSpringConstant : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseFibreOrientation : AbstractConductivityTensors< SPACE_DIM >
mUseFixedSchemaLocation : HeartConfig
mUseImplicitExplicitSolveForZ : NhsSystemWithImplicitSolver
mUseJiggledBottomCells : CryptSimulation2d
mUseMatrixBasedRhsAssembly : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mUseMutantSprings : LinearSpringWithVariableSpringConstantsForce< DIM >
mUseNonConstantConductivities : AbstractConductivityTensors< SPACE_DIM >
mUsingBodyForceFunction : AbstractNonlinearElasticityAssembler< DIM >
mUsingTractionBoundaryConditionFunction : AbstractNonlinearElasticityAssembler< DIM >
MutableMesh() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
mValue : ConstBoundaryCondition< SPACE_DIM >
mValues : ColumnDataReader
mVariableName : DataWriterVariable
mVariableNames : Hdf5DataReader , AbstractOdeSystemInformation
mVariableParameterMaps : CombinedOdeSystem
mVariables : Hdf5DataWriter , ColumnDataWriter
mVariablesDatasetId : Hdf5DataReader
mVariablesDatasetRank : Hdf5DataReader
mVariablesDatasetSizes : Hdf5DataReader
mVariablesToColumns : ColumnDataReader
mVariablesToUnits : ColumnDataReader
mVariableToColumnIndex : Hdf5DataReader
mVariableToUnit : Hdf5DataReader
mVariableUnits : AbstractOdeSystemInformation , DataWriterVariable
mVariesWithFixedDimension : DataWriterVariable
mVariesWithUnlimitedDimension : DataWriterVariable
mVec : DistributedVector
mVectorForMatrixBasedRhsAssembly : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
mVertices : VoronoiTessellation< DIM > , Face< DIM >
mVoltageColumnId : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mVoltageIndex : AbstractCardiacCell
mVoltageName : PropagationPropertiesCalculator
mVoronoiCells : VoronoiTessellation< DIM >
mWatchedElectricsNodeIndex : CardiacElectroMechanicsProblem< DIM >
mWatchedLocation : CardiacElectroMechanicsProblem< DIM >
mWatchedMechanicsNodeIndex : CardiacElectroMechanicsProblem< DIM >
mWeAllocatedSolverMemory : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
mWeights : GaussianQuadratureRule< ELEM_DIM >
mWidth : Cylindrical2dMesh
mWntChemotaxisStrength : TissueConfig
mWntStemThreshold : TissueConfig
mWntTransitThreshold : TissueConfig
mWntType : WntConcentration< DIM >
mWorkingDerivs : CombinedOdeSystem
mWorkingMemory : AbstractOneStepIvpOdeSolver
mWorkingStateVars : CombinedOdeSystem
mWriteInfo : AbstractCardiacProblem< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
mWriteMetaFile : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
mWriteOutput : AbstractNonlinearElasticityAssembler< DIM > , CardiacElectroMechanicsProblem< DIM >
mWriteStats : SimpleNewtonNonlinearSolver
mXiC : IngeWntSwatCellCycleOdeSystem
mXiD : IngeWntSwatCellCycleOdeSystem
mXiDx : IngeWntSwatCellCycleOdeSystem
mXiX : IngeWntSwatCellCycleOdeSystem
myk2 : RungeKuttaFehlbergIvpOdeSolver
myk3 : RungeKuttaFehlbergIvpOdeSolver
myk4 : RungeKuttaFehlbergIvpOdeSolver
myk5 : RungeKuttaFehlbergIvpOdeSolver
myk6 : RungeKuttaFehlbergIvpOdeSolver
mZp : NhsCellularMechanicsOdeSystem