Here is a list of all documented class members with links to the class documentation for each member:
- g_ca_b
: DiFrancescoNoble1985OdeSystem
- g_fk
: DiFrancescoNoble1985OdeSystem
- g_fna
: DiFrancescoNoble1985OdeSystem
- g_k1
: DiFrancescoNoble1985OdeSystem
- g_na
: DiFrancescoNoble1985OdeSystem
- g_na_b
: DiFrancescoNoble1985OdeSystem
- g_to
: DiFrancescoNoble1985OdeSystem
- gamma
: DiFrancescoNoble1985OdeSystem
- GaussianQuadratureRule()
: GaussianQuadratureRule< ELEMENT_DIM >
- GeneralisedLinearSpringForce()
: GeneralisedLinearSpringForce< DIM >
- GeneralPlaneStimulusCellFactory()
: GeneralPlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
- Generate()
: CryptCellsGenerator< CELL_CYCLE_MODEL >
- GenerateBasic()
: CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateCellResults()
: AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
- GenerateCellResultsAndWriteToFiles()
: AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
- GenerateGivenLocationIndices()
: CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateNullBasis()
: BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
- GenerateOrthotropicFibreOrientation()
: StreeterFibreGenerator< SPACE_DIM >
- GenerateVectorsOfElementsStraddlingPeriodicBoundaries()
: Cylindrical2dMesh
- GenerateVerticesFromElementCircumcentres()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
, VoronoiTessellation< DIM >
- Get()
: ProcessSpecificArchive< Archive >
, QuadraturePointsGroup< DIM >
, CellMutationStateRegistry
- Get_d2W_dI1()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI1I2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI1()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI2()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- GetA()
: ExponentialMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GetAbsolutePath()
: FileFinder
- GetAbsoluteTolerance()
: HeartConfig
- GetActionPotentialAmplitudes()
: CellProperties
- GetActiveTension()
: AbstractContractionModel
, Kerchoffs2003ContractionModel
, Nash2004ContractionModel
, NhsContractionModel
, NonPhysiologicalContractionModel
- GetActiveTensionAndTensionDerivs()
: ExplicitCardiacMechanicsAssembler< DIM >
, ImplicitCardiacMechanicsAssembler< DIM >
, AbstractCardiacMechanicsAssembler< DIM >
- GetAge()
: AbstractCellCycleModel
, TissueCell
- GetAllActionPotentialDurations()
: CellProperties
- GetAlpha()
: PolynomialMaterialLaw3d
- GetAncestor()
: TissueCell
- GetAngleBetweenNodes()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetAnyNode()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetApdMaps()
: HeartConfig
- GetApoptosisTime()
: TissueConfig
- GetApoptoticSpringCompressionStiffness()
: TissueConfig
- GetApoptoticSpringTensionStiffness()
: TissueConfig
- GetArchiveDirectory()
: ArchiveLocationInfo
- GetArchivedSimulationDir()
: HeartConfig
- GetArchiveRelativePath()
: ArchiveLocationInfo
- GetAreaBasedDampingConstantParameter()
: TissueConfig
- GetAreaGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetAreaOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetAreaOfFace()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetAveragedThicknessLocalNode()
: StreeterFibreGenerator< SPACE_DIM >
- GetAverageStemCellCycleTime()
: AbstractWntOdeBasedCellCycleModel
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetAverageTransitCellCycleTime()
: AbstractWntOdeBasedCellCycleModel
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetB()
: ExponentialMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GetBathConductivity()
: HeartConfig
- GetBetaCateninConcentration()
: SingleOdeWntCellCycleModel
- GetBetaCateninDivisionThreshold()
: SingleOdeWntCellCycleModel
- GetBetaCatSpringScaler()
: TissueConfig
- GetBidomainPde()
: BidomainProblem< DIM >
- GetBirthTime()
: AbstractCellCycleModel
, TissueCell
- GetBoundaryConditionsContainer()
: Electrodes< DIM >
- GetBoundaryElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorBegin()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorEnd()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoxCollection()
: NodeBasedTissue< DIM >
- GetBuilderUnameInfo()
: ChasteBuildInfo
- GetBuildInformation()
: ChasteBuildInfo
- GetBuildTime()
: ChasteBuildInfo
- GetC1()
: MooneyRivlinMaterialLaw< DIM >
- GetC2()
: MooneyRivlinMaterialLaw< DIM >
- GetCalciumTroponinValue()
: NhsContractionModel
- GetCallCount()
: MockEulerIvpOdeSolver
- GetCapacitance()
: HeartConfig
- GetCardiacCell()
: AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM >
- GetCell()
: AbstractCellCycleModel
- GetCellAncestors()
: AbstractTissue< DIM >
- GetCellBoundaryAdhesionEnergyParameter()
: TissueConfig
- GetCellCellAdhesionEnergyParameter()
: TissueConfig
- GetCellCount()
: AbstractCellMutationState
- GetCellCycleModel()
: TissueCell
- GetCellHeterogeneities()
: HeartConfig
- GetCellId()
: TissueCell
- GetCellLocationIndices()
: HoneycombMeshGenerator
- GetCellMutationStateCount()
: AbstractTissue< DIM >
- GetCellProliferativeType()
: TissueCell
- GetCentroidOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetChasteTestOutputDirectory()
: OutputFileHandler
- GetCheckpointSimulation()
: HeartConfig
- GetCheckpointTimestep()
: HeartConfig
- GetCircularMesh()
: HoneycombMeshGenerator
- GetColour()
: AbstractCellMutationState
- GetCommonArchive()
: ArchiveOpener< Archive, Stream >
- GetConductionVelocityMaps()
: HeartConfig
- GetConductivityHeterogeneities()
: HeartConfig
- GetConductivityHeterogeneitiesProvided()
: HeartConfig
- GetConductivityMedia()
: HeartConfig
- GetContainingElementIndex()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndexWithInitialGuess()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndices()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetCorrespondingNodeIndex()
: Cylindrical2dMesh
- GetCpuTime()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetCreateFibre()
: HeartConfig
- GetCreateMesh()
: HeartConfig
- GetCreateSheet()
: HeartConfig
- GetCreateSlab()
: HeartConfig
- GetCriticalHypoxicDuration()
: TissueConfig
- GetCryptLength()
: TissueConfig
- GetCryptProjectionParameterA()
: TissueConfig
- GetCryptProjectionParameterB()
: TissueConfig
- GetCryptSection()
: CryptStatistics
- GetCryptSectionPeriodic()
: CryptStatistics
- GetCryptWidth()
: TissueConfig
- GetCurrentCellCyclePhase()
: AbstractCellCycleModel
- GetCurrentSolutionOrGuessValue()
: AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
- GetCurrentTime()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, ChasteBuildInfo
- GetCutoffPoint()
: AbstractTwoBodyInteractionForce< DIM >
- GetCycleLengths()
: CellProperties
- GetCylindricalMesh()
: HoneycombMeshGenerator
- GetCytoplasmicBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetDampingConstant()
: AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
, MeshBasedTissue< DIM >
- GetDampingConstantMutant()
: TissueConfig
- GetDampingConstantNormal()
: TissueConfig
- GetDataReader()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDeathProbabilityInAnHour()
: RandomCellKiller< DIM >
- GetDefaultIonicModel()
: HeartConfig
- GetDeformationEnergyParameter()
: TissueConfig
- GetDimension()
: AbstractCellCycleModel
- GetDirichletBCValue()
: AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDistanceBetweenNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDistanceToEndo()
: HeartGeometryInformation< SPACE_DIM >
- GetDistanceToEpi()
: HeartGeometryInformation< SPACE_DIM >
- GetDistributedVectorFactory()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDivisionRestingSpringLength()
: TissueConfig
- GetDivisionSeparation()
: TissueConfig
- GetDoCacheReplication()
: AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM >
- GetDomain()
: HeartConfig
- GetDt()
: TissueSimulation< DIM >
- GetEdgeData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetEdgeLength()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
, VoronoiTessellation< DIM >
- GetElapsedTime()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorBegin()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorEnd()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetEndoLayerFraction()
: HeartConfig
- GetEndoLayerIndex()
: HeartConfig
- GetEpiLayerFraction()
: HeartConfig
- GetEpiLayerIndex()
: HeartConfig
- GetExtracellularConductivities()
: HeartConfig
- GetFace()
: VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetFaceArea()
: VoronoiTessellation< DIM >
- GetFaceData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetFacePerimeter()
: VoronoiTessellation< DIM >
- GetFactory()
: DistributedVector
, DistributedVector::Stripe
- GetFibreLength()
: HeartConfig
- GetFibreMaxAngle()
: StreeterFibreGenerator< SPACE_DIM >
- GetFieldWidth()
: ColumnDataReader
- GetG1Duration()
: AbstractCellCycleModel
- GetG2Duration()
: TissueConfig
, StochasticWntCellCycleModel
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetGeneration()
: AbstractSimpleGenerationBasedCellCycleModel
- GetGhostNodeIndices()
: MeshBasedTissueWithGhostNodes< DIM >
- GetGradationForAdaptivity()
: HeartConfig
- GetHaloNodeIndices()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHeartGeometryInformation()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetHeartRegion()
: HeartGeometryInformation< SPACE_DIM >
- GetHepaOneCellG1Duration()
: TissueConfig
- GetHepaOneCellHypoxicConcentration()
: TissueConfig
- GetHepaOneCellQuiescentConcentration()
: TissueConfig
- GetHigh()
: DistributedVector
, DistributedVectorFactory
- GetIIonic()
: AbstractCardiacCell
, Cellluo_rudy_1991FromCellML
, CML_luo_rudy_1991_pe_lut_be
, Cellluo_rudy_1991FromCellMLOpt
, FakeBathCell
, BackwardEulerFoxModel2002Modified
, BackwardEulerLuoRudyIModel1991
, BackwardEulerMahajanModel2008
, BackwardEulerNobleVargheseKohlNoble1998
, BackwardEulerTenTusscher2006
, DiFrancescoNoble1985OdeSystem
, FaberRudy2000Version3
, FaberRudy2000Version3Optimised
, FitzHughNagumo1961OdeSystem
, FoxModel2002Modified
, HodgkinHuxleySquidAxon1952OriginalOdeSystem
, LuoRudyIModel1991OdeSystem
, Mahajan2008OdeSystem
, Maleckar2009OdeSystem
, CML_noble_varghese_kohl_noble_1998_basic
, CML_noble_varghese_kohl_noble_1998_basic_pe_lut
, CellShannon2004FromCellML
, TenTusscher2006OdeSystem
- GetIncompleteNodeMap()
: Hdf5DataReader
- GetIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetInitialConditions()
: AbstractOdeSystemInformation
, AbstractOdeSystem
- GetIntegrand()
: PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetInterNodeSpace()
: HeartConfig
- GetIntracellularCalciumConcentration()
: AbstractCardiacCell
, BackwardEulerLuoRudyIModel1991
, LuoRudyIModel1991OdeSystem
- GetIntracellularConductivities()
: HeartConfig
- GetIntracellularStimulus()
: AbstractCardiacCell
- GetInverseJacobianForElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetIonicModelRegions()
: HeartConfig
- GetIsDirRelativeToChasteTestOutput()
: ArchiveLocationInfo
- GetJacobianForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetKSPPreconditioner()
: HeartConfig
- GetKSPSolver()
: HeartConfig
- GetLastActionPotentialDuration()
: CellProperties
- GetLastMaxUpstrokeVelocity()
: CellProperties
- GetLastPeakPotential()
: CellProperties
- GetLhsMatrix()
: LinearSystem
- GetLinearSystem()
: AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
- GetLoadableModulePath()
: DynamicCellModelLoader
- GetLoader()
: AbstractDynamicallyLoadableEntity
, DynamicModelLoaderRegistry
- GetLoadMesh()
: HeartConfig
- GetLocalBoxes()
: BoxCollection< DIM >
- GetLocalIndexForElementEdgeClosestToPoint()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocalOwnership()
: DistributedVectorFactory
- GetLocationIndexUsingCell()
: AbstractTissue< DIM >
- GetLocationOfCellCentre()
: AbstractCellCentreBasedTissue< DIM >
, AbstractTissue< DIM >
- GetLow()
: DistributedVector
, DistributedVectorFactory
- GetMajorReleaseNumber()
: ChasteBuildInfo
- GetMatrix()
: BidomainRhsMatrixAssembler< DIM >
, BidomainWithBathRhsMatrixAssembler< DIM >
, MonodomainRhsMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
- GetMatrixElement()
: LinearSystem
- GetMatrixRowDistributed()
: LinearSystem
- GetMatureCellTargetArea()
: TissueConfig
- GetMaxCheckpointsOnDisk()
: HeartConfig
- GetMaxEdgeLengthForAdaptivity()
: HeartConfig
- GetMaxNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMaxNodesForAdaptivity()
: HeartConfig
- GetMaxTransitGenerations()
: TissueConfig
- GetMaxUpstrokeVelocities()
: CellProperties
- GetMaxUpstrokeVelocityMaps()
: HeartConfig
- GetMDuration()
: TissueConfig
, AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetMechanicsCutOffLength()
: TissueConfig
- GetMembraneBoundBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetMembraneSurfaceEnergyParameter()
: TissueConfig
- GetMesh()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
, HoneycombVertexMeshGenerator
, HoneycombMeshGenerator
- GetMeshFileBaseName()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMeshFilename()
: ArchiveLocationInfo
- GetMeshName()
: HeartConfig
- GetMeshNum()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetMessage()
: Exception
- GetMidLayerFraction()
: HeartConfig
- GetMidLayerIndex()
: HeartConfig
- GetMinEdgeLengthForAdaptivity()
: HeartConfig
- GetMinimumGapDuration()
: TissueConfig
- GetMinNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMinorReleaseNumber()
: ChasteBuildInfo
- GetMonodomainPde()
: MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
- GetMutationRegistry()
: AbstractTissue< DIM >
- GetMutationState()
: Mirams2010WntOdeSystem
, VanLeeuwen2009WntSwatCellCycleOdeSystem
, WntCellCycleOdeSystem
, TissueCell
- GetMyRank()
: PetscTools
- GetNearestElementIndex()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNearestElementIndexFromTestElements()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringNodeIndices()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringNodeNotAlsoInElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeumannBCValue()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetNewIndex()
: NodeMap
, VertexElementMap
- GetNextActiveTension()
: Kerchoffs2003ContractionModel
, AbstractAlgebraicContractionModel
, AbstractContractionModel
, Nash2004ContractionModel
, NhsContractionModel
, NhsModelWithBackwardSolver
- GetNextEdgeData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextEdgeGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNextElement()
: VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextElementData()
: VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextFaceData()
: VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextItemFromStream()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextLineFromStream()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextNode()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextTime()
: TimeStepper
- GetNextTimeStep()
: TimeStepper
- GetNode()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractTissue< DIM >
, MeshBasedTissue< DIM >
, NodeBasedTissue< DIM >
- GetNodeA()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, MeshBasedTissue< DIM >::SpringIterator
- GetNodeB()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, MeshBasedTissue< DIM >::SpringIterator
- GetNodeCorrespondingToCell()
: AbstractCellCentreBasedTissue< DIM >
- GetNodeFromPrePermutationIndex()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeGlobalIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeLocalIndex()
: VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
- GetNodeLocation()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, TissueSimulation< DIM >
- GetNodesAtSurface()
: HeartGeometryInformation< SPACE_DIM >
- GetNodesByComponentValue()
: NonlinearElasticityTools< DIM >
- GetNuclearBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetNumAllBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfAboveThresholdDepolarisationsForAllAps()
: CellProperties
- GetNumberOfAboveThresholdDepolarisationsForLastAp()
: CellProperties
- GetNumberOfAdaptiveSweeps()
: HeartConfig
- GetNumberOfCells()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfParameters()
: AbstractOdeSystem
- GetNumberOfRows()
: Hdf5DataReader
- GetNumberOfStateVariables()
: AbstractOdeSystem
- GetNumberOfTimeSteps()
: OdeSolution
- GetNumBirths()
: TissueSimulation< DIM >
- GetNumBoundaryEdges()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetNumBoundaryFaces()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumBoxes()
: BoxCollection< DIM >
- GetNumCells()
: VoronoiTessellation< DIM >
- GetNumContainingElements()
: Node< SPACE_DIM >
- GetNumDeaths()
: TissueSimulation< DIM >
- GetNumEdges()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElementAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, QuadraturePointsGroup< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumElementsFromFile()
: AbstractConductivityTensors< SPACE_DIM >
- GetNumFaceAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumFaces()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, VoronoiTessellation< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VoronoiCell
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumIterations()
: LinearSystem
- GetNumLocalBoundaryElements()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalElements()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalNodes()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumNewtonIterations()
: AbstractNonlinearElasticityAssembler< DIM >
- GetNumNodes()
: MeshBasedTissue< DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, CmguiDeformedSolutionsWriter< DIM >
, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, NodeBasedTissue< DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractTissue< DIM >
- GetNumProcs()
: DistributedVectorFactory
, PetscTools
- GetNumQuadPoints()
: GaussianQuadratureRule< ELEMENT_DIM >
- GetNumQuadPointsPerElement()
: QuadraturePointsGroup< DIM >
- GetNumRealCells()
: AbstractTissue< DIM >
- GetNumSlowValues()
: AbstractCardiacCell
- GetNumVertices()
: Face< DIM >
, QuadraticMesh< DIM >
, Face< DIM >
, VoronoiTessellation< DIM >
- GetOdeStopTime()
: AbstractWntOdeBasedCellCycleModel
, TysonNovakCellCycleModel
, AbstractOdeBasedCellCycleModel
- GetOdeTimeStep()
: HeartConfig
- GetOneDimBoundary()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfBoundaryElements()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfElements()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOriginalFactory()
: DistributedVectorFactory
- GetOutputCellAges()
: TissueConfig
- GetOutputCellAncestors()
: TissueConfig
- GetOutputCellAreas()
: TissueConfig
- GetOutputCellCyclePhases()
: TissueConfig
- GetOutputCellIdData()
: TissueConfig
- GetOutputCellMutationStates()
: TissueConfig
- GetOutputCellProliferativeTypes()
: TissueConfig
- GetOutputCellVariables()
: TissueConfig
- GetOutputDirectory()
: HeartConfig
, ColumnDataWriter
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, TissueSimulation< DIM >
- GetOutputDirectoryFullPath()
: OutputFileHandler
- GetOutputFilenamePrefix()
: HeartConfig
- GetOutputNodeVelocities()
: TissueConfig
- GetOutputTissueAreas()
: TissueConfig
- GetOutputVariables()
: HeartConfig
- GetOutputVariablesProvided()
: HeartConfig
- GetOutputVoronoiData()
: TissueConfig
- GetOwnership()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetOwnershipRange()
: LinearSystem
- GetParameter()
: AbstractOdeSystem
- GetPartitionType()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetPde()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetPdeTimeStep()
: HeartConfig
- GetPeakPotentials()
: CellProperties
- GetPerimeterGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPerimeterOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPoint()
: Node< SPACE_DIM >
- GetPreviousEdgeGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPrintingTimeStep()
: HeartConfig
- GetProblemSize()
: DistributedVectorFactory
- GetProcessUniqueFilePath()
: ArchiveLocationInfo
- GetProteinConcentrations()
: AbstractOdeBasedCellCycleModel
- GetProvenanceString()
: ChasteBuildInfo
- GetQuadratureRule()
: AbstractCardiacMechanicsAssembler< DIM >
- GetRadiusVectorForOneElement()
: PapillaryFibreCalculator
- GetRadiusVectors()
: PapillaryFibreCalculator
- GetRawDataFromFile()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetReadContainingElementOfBoundaryElement()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetRegion()
: Node< SPACE_DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetRelativeTolerance()
: HeartConfig
- GetRestingPotentials()
: CellProperties
- GetRevisionNumber()
: ChasteBuildInfo
- GetRhsVector()
: LinearSystem
- GetRhsVectorElement()
: LinearSystem
- GetRootDir()
: ChasteBuildInfo
- GetSDuration()
: TissueConfig
, TysonNovakCellCycleModel
, AbstractCellCycleModel
- GetSG2MDuration()
: TissueConfig
- GetSheetDimensions()
: HeartConfig
- GetShortAxisOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetShortMessage()
: Exception
- GetSigmaForAdaptivity()
: HeartConfig
- GetSimulationDuration()
: HeartConfig
- GetSize()
: ReplicatableVector
, LinearSystem
- GetSlabDimensions()
: HeartConfig
- GetSloughSides()
: SloughingCellKiller< DIM >
- GetSlowValues()
: AbstractCardiacCell
- GetSolution()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolutionDistributedVector()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolver()
: AbstractCardiacCell
- GetSpaceDimension()
: HeartConfig
- GetSpaceStep()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetSpringStiffness()
: TissueConfig
- GetStartOfApoptosisTime()
: TissueCell
- GetStateVariableNumberByName()
: AbstractOdeSystemInformation
, AbstractOdeSystem
- GetStateVariableUnitsByNumber()
: AbstractOdeSystem
, AbstractOdeSystemInformation
- GetStateVariableValueByNumber()
: AbstractOdeSystem
- GetStemCellG1Duration()
: TissueConfig
- GetStiffnessMatrixGlobalIndices()
: AbstractTetrahedralElement< 0, SPACE_DIM >
, AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
- GetStimuli()
: HeartConfig
- GetStimulus()
: AbstractStimulusFunction
, MultiStimulus
, RegularStimulus
, ZeroStimulus
, SimpleStimulus
, AbstractCardiacCell
- GetStimulusFunction()
: AbstractCardiacCell
- GetStoppingTime()
: AbstractIvpOdeSolver
- GetSurfaceArea()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaToVolumeRatio()
: HeartConfig
- GetSwitchOffTime()
: Electrodes< DIM >
- GetSwitchOnTime()
: Electrodes< DIM >
- GetSymmetricDivisionProbability()
: TissueConfig
- GetSystemInformation()
: AbstractOdeSystem
- GetSystemSize()
: BackwardEulerIvpOdeSolver
- GetTargetErrorForAdaptivity()
: HeartConfig
- GetTime()
: TimeStepper
, PdeSimulationTime
, SimulationTime
- GetTimeAtLastMaxUpstrokeVelocity()
: CellProperties
- GetTimesAtMaxUpstrokeVelocity()
: CellProperties
- GetTimeStep()
: SimulationTime
- GetTimeStepsElapsed()
: SimulationTime
- GetTimeUntilDeath()
: TissueCell
- GetTissue()
: AbstractCellKiller< SPACE_DIM >
- GetTokensAtNextLine()
: AbstractConductivityTensors< SPACE_DIM >
- GetTotalNumberOfTimeSteps()
: SimulationTime
- GetTotalNumQuadPoints()
: AbstractCardiacMechanicsAssembler< DIM >
- GetTotalTimeStepsTaken()
: TimeStepper
- GetTransitCellG1Duration()
: TissueConfig
- GetType()
: WntConcentration< DIM >
- GetUnit()
: Hdf5DataReader
- GetUnitNormalToFace()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetUnlimitedDimensionValues()
: Hdf5DataReader
, ColumnDataReader
- GetUpstrokeTimeMaps()
: HeartConfig
- GetUseAbsoluteTolerance()
: HeartConfig
- GetUseAnalyticJacobian()
: AbstractOdeSystem
- GetUseRelativeTolerance()
: HeartConfig
- GetValue()
: StimulusBoundaryCondition< SPACE_DIM >
, CellwiseData< DIM >
, ConstBoundaryCondition< SPACE_DIM >
, FunctionalBoundaryCondition< SPACE_DIM >
, AbstractBoundaryCondition< SPACE_DIM >
- GetValues()
: AbstractDataReader
, ColumnDataReader
, AbstractDataReader
, ColumnDataReader
- GetVariableAtIndex()
: OdeSolution
- GetVariableByName()
: Hdf5DataWriter
- GetVariableNames()
: Hdf5DataReader
- GetVariableOverNodes()
: Hdf5DataReader
- GetVariableOverTime()
: Hdf5DataReader
- GetVectorFromAtoB()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
- GetVersionString()
: ChasteBuildInfo
- GetVertex()
: VoronoiTessellation< DIM >
- GetVisualizeWithCmgui()
: HeartConfig
- GetVisualizeWithMeshalyzer()
: HeartConfig
- GetVisualizeWithVtk()
: HeartConfig
- GetVoltage()
: AbstractCardiacCell
- GetVoltageIndex()
: AbstractCardiacCell
- GetVolume()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetVolumeOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeight()
: GaussianQuadratureRule< ELEMENT_DIM >
- GetWeightedDirectionForBoundaryElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeightedDirectionForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWelikyOsterAreaParameter()
: TissueConfig
- GetWelikyOsterPerimeterParameter()
: TissueConfig
- GetWidth()
: CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
- GetWidthExtremes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetWntChemotaxisStrength()
: TissueConfig
- GetWntConcentrationParameter()
: TissueConfig
- GetWntGradient()
: WntConcentration< DIM >
- GetWntLabelledThreshold()
: TissueConfig
- GetWntLevel()
: AbstractWntOdeBasedCellCycleModel
, WntConcentration< DIM >
, SimpleWntCellCycleModel
, WntConcentration< DIM >
- GetWntStemThreshold()
: TissueConfig
- GetWntTransitThreshold()
: TissueConfig
- GetWntType()
: SimpleWntCellCycleModel
- GetZeroedAlpha()
: PolynomialMaterialLaw3d
- GetZeroStrainPressure()
: AbstractIsotropicIncompressibleMaterialLaw< DIM >
, AbstractIncompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
, PoleZeroMaterialLaw< DIM >
- GiveUpConvergence()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- Global
: DistributedVector::Iterator