Here is a list of all documented class members with links to the class documentation for each member:

- s -

• S_DIM : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainRhsMatrixAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE >
• save() : VertexMesh< ELEMENT_DIM, SPACE_DIM > , BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractDynamicallyLoadableEntity , AbstractVanLeeuwen2009WntSwatCellCycleModel , SingleOdeWntCellCycleModel , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , WntCellCycleModel
• Save() : CardiacSimulationArchiver< PROBLEM_CLASS >
• save() : BidomainProblem< DIM >
• Save() : TissueSimulationArchiver< DIM, SIM >
• save() : Electrodes< DIM > , HeartConfig , RandomNumberGenerator , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SaveBoundaryConditions() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SaveCardiacCells() : AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM >
• Scale() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ScaleAndWrite() : InventorVoronoiWriter
• ScaleMaterialParameters() : AbstractIncompressibleMaterialLaw< DIM > , MooneyRivlinMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM >
• SchemaLocationsMap : HeartConfig
• SchmidCostaExponentialLaw2d() : SchmidCostaExponentialLaw2d
• SelfType : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• serialize() : LinearSystem , AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , MutableMesh< ELEMENT_DIM, SPACE_DIM > , NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , QuadraticMesh< DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , VertexElement< ELEMENT_DIM, SPACE_DIM > , AbstractOdeSystem , AbstractIvpOdeSolver , AbstractOneStepIvpOdeSolver , BackwardEulerIvpOdeSolver , AbstractBackwardEulerCardiacCell< SIZE > , EulerIvpOdeSolver , HeunIvpOdeSolver , AbstractCardiacCell , MockEulerIvpOdeSolver , RungeKutta2IvpOdeSolver , Cellluo_rudy_1991FromCellML , RungeKutta4IvpOdeSolver , RungeKuttaFehlbergIvpOdeSolver , CML_luo_rudy_1991_pe_lut_be , AbstractBoundaryCondition< SPACE_DIM > , ConstBoundaryCondition< SPACE_DIM > , Cellluo_rudy_1991FromCellMLOpt , SimulationTime , TissueConfig , FakeBathCell , AbstractWntOdeBasedCellCycleModel , SimpleWntCellCycleModel , BackwardEulerFoxModel2002Modified , StochasticWntCellCycleModel , VanLeeuwen2009WntSwatCellCycleModelHypothesisOne , BackwardEulerLuoRudyIModel1991 , VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo , WntConcentration< DIM > , BackwardEulerMahajanModel2008 , SloughingCellKiller< DIM > , Cylindrical2dMesh , BackwardEulerNobleVargheseKohlNoble1998 , CryptSimulation1d , CryptSimulation2d , BackwardEulerTenTusscher2006 , TissueSimulation< DIM > , AbstractCellCentreBasedTissue< DIM > , FaberRudy2000Version3 , AbstractTissue< DIM > , AbstractCellCycleModel , LuoRudyIModel1991OdeSystem , AbstractOdeBasedCellCycleModel , AbstractOdeBasedCellCycleModelWithStoppingEvent , Maleckar2009OdeSystem , AbstractSimpleCellCycleModel , AbstractSimpleGenerationBasedCellCycleModel , CML_noble_varghese_kohl_noble_1998_basic , FixedDurationGenerationBasedCellCycleModel , StochasticDurationGenerationBasedCellCycleModel , CellShannon2004FromCellML , TysonNovakCellCycleModel , AbstractCellMutationState , AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM > , ApcOneHitCellMutationState , ApcTwoHitCellMutationState , BidomainPde< SPACE_DIM > , BetaCateninOneHitCellMutationState , CellMutationStateRegistry , MonodomainPde< ELEMENT_DIM, SPACE_DIM > , LabelledCellMutationState , WildTypeCellMutationState , MonodomainProblem< ELEMENT_DIM, SPACE_DIM > , TissueCell , CellwiseData< DIM > , AbstractStimulusFunction , AbstractCellKiller< SPACE_DIM > , RandomCellKiller< DIM > , MultiStimulus , AbstractForce< DIM > , AbstractTwoBodyInteractionForce< DIM > , RegularStimulus , GeneralisedLinearSpringForce< DIM > , LinearSpringWithVariableSpringConstantsForce< DIM > , SimpleStimulus , MeshBasedTissue< DIM > , MeshBasedTissueWithGhostNodes< DIM > , ZeroStimulus , NodeBasedTissue< DIM > , DistributedVectorFactory
• Set() : ProcessSpecificArchive< Archive > , LogFile
• SetAbsolutePath() : FileFinder
• SetAbsoluteTolerance() : LinearSystem
• SetAdaptivityParameters() : HeartConfig
• SetAdditionalFieldNames() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetAncestor() : TissueCell
• SetApdMaps() : HeartConfig
• SetApoptosisTime() : TissueConfig
• SetApoptoticSpringCompressionStiffness() : TissueConfig
• SetApoptoticSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetApoptoticSpringTensionStiffness() : TissueConfig
• SetArchiveDirectory() : ArchiveLocationInfo , OutputFileHandler
• SetAreaBasedDampingConstant() : MeshBasedTissue< DIM >
• SetAreaBasedDampingConstantParameter() : TissueConfig
• SetAsBoundaryNode() : Node< SPACE_DIM >
• SetAsProduct() : FourthOrderTensor< DIM >
• SetBathConductivity() : HeartConfig
• SetBetaCateninDivisionThreshold() : SingleOdeWntCellCycleModel
• SetBetaCateninSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetBetaCatSpringScaler() : TissueConfig
• SetBirthTime() : AbstractCellCycleModel , AbstractOdeBasedCellCycleModel , TissueCell
• SetBottomCellAncestors() : CryptSimulation2d
• SetBoundaryConditionsContainer() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetCacheReplication() : AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM >
• SetCalciumAndVoltage() : AbstractCardiacMechanicsAssembler< DIM >
• SetCapacitance() : HeartConfig
• SetCell() : AbstractCellCycleModel
• SetCellAncestorsToLocationIndices() : AbstractTissue< DIM >
• SetCellBoundaryAdhesionEnergyParameter() : TissueConfig
• SetCellCellAdhesionEnergyParameter() : TissueConfig
• SetCellCentre() : VoronoiCell
• SetCellCycleModel() : TissueCell
• SetCellProliferativeType() : TissueCell
• SetChangeOfBasisMatrix() : AbstractIncompressibleMaterialLaw< DIM > , AbstractIsotropicIncompressibleMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
• SetCheckNumberOfProcessesOnLoad() : DistributedVectorFactory
• SetCheckpointSimulation() : HeartConfig
• SetConductionVelocityMaps() : HeartConfig
• SetConductivityHeterogeneities() : HeartConfig
• SetConstantConductivities() : AbstractConductivityTensors< SPACE_DIM > , AxisymmetricConductivityTensors< SPACE_DIM >
• SetConstantDataForTesting() : CellwiseData< DIM >
• SetConstantFibreSheetDirections() : AbstractCardiacMechanicsAssembler< DIM >
• SetConstantWntValueForTesting() : WntConcentration< DIM >
• SetCoordinate() : ChastePoint< DIM >
• SetCriticalHypoxicDuration() : TissueConfig
• SetCryptLength() : TissueConfig
• SetCryptProjectionParameterA() : TissueConfig
• SetCryptProjectionParameterB() : TissueConfig
• SetCryptWidth() : TissueConfig
• SetDampingConstantMutant() : TissueConfig
• SetDampingConstantNormal() : TissueConfig
• SetDefaultIonicModel() : HeartConfig
• SetDefaultMutationStateOrdering() : AbstractTissue< DIM >
• SetDefaultSchemaLocations() : HeartConfig
• SetDefaultsFile() : HeartConfig
• SetDeformationEnergyParameter() : TissueConfig
• SetDeleted() : NodeMap , VertexElementMap
• SetDiffusionCoefficient() : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetDimension() : AbstractCellCycleModel
• SetDistributedVectorFactory() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SetDivisionRestingSpringLength() : TissueConfig
• SetDivisionSeparation() : TissueConfig
• SetDomain() : HeartConfig
• SetDt() : TissueSimulation< DIM >
• SetEdgeBasedSpringConstant() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetElectrodes() : BidomainProblem< DIM >
• SetElementOwnerships() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SetEndTime() : TissueSimulation< DIM >
• SetEndTimeAndNumberOfTimeSteps() : SimulationTime
• SetEpsilonForNumericalJacobian() : BackwardEulerIvpOdeSolver
• SetExtracellularConductivities() : HeartConfig
• SetFibreLength() : HeartConfig
• SetFibreOrientationFile() : AbstractConductivityTensors< SPACE_DIM >
• SetFixedExtracellularPotentialNodes() : BidomainProblem< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• SetFixedSchemaLocations() : HeartConfig
• SetFromFactory() : DistributedVectorFactory
• SetFunctionalBodyForce() : AbstractNonlinearElasticityAssembler< DIM >
• SetFunctionalTractionBoundaryCondition() : NonlinearElasticityAssembler< DIM >
• SetG1Duration() : SimpleWntCellCycleModel , AbstractSimpleCellCycleModel , StochasticDurationGenerationBasedCellCycleModel
• SetG2Duration() : TissueConfig , StochasticWntCellCycleModel
• SetGeneration() : AbstractSimpleGenerationBasedCellCycleModel
• SetGhostNodes() : MeshBasedTissueWithGhostNodes< DIM >
• SetGradationForAdaptivity() : HeartConfig
• SetHeartGeometryInformation() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
• SetHepaOneCellG1Duration() : TissueConfig
• SetHepaOneCellHypoxicConcentration() : TissueConfig
• SetHepaOneCellQuiescentConcentration() : TissueConfig
• SetHepaOneParameters() : TissueConfig
• SetIndex() : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
• SetInitialCondition() : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetInitialConditions() : AbstractOdeSystem , AbstractOdeSystemInformation
• SetInitialConditionsComponent() : AbstractOdeSystem , AbstractOdeSystemInformation
• SetInitialConvergenceParameters() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• SetInputParameters() : AbstractContractionModel , Kerchoffs2003ContractionModel , Nash2004ContractionModel , NhsContractionModel , NonPhysiologicalContractionModel
• SetIntracellularCalciumConcentration() : NhsContractionModel
• SetIntracellularConductivities() : HeartConfig
• SetIntracellularStimulusFunction() : AbstractCardiacCell
• SetIonicModelRegions() : HeartConfig
• SetKSPPreconditioner() : HeartConfig
• SetKSPSolver() : HeartConfig
• SetKspType() : LinearSystem
• SetLoader() : AbstractDynamicallyLoadableEntity
• SetLogged() : TissueCell
• SetMatrixElement() : LinearSystem
• SetMatrixIsConst() : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SetMatrixIsConstant() : LinearSystem , AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetMatrixIsNotAssembled() : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetMatrixIsSymmetric() : LinearSystem
• SetMatrixRow() : LinearSystem
• SetMatureCellTargetArea() : TissueConfig
• SetMaxEdgeLengthForAdaptivity() : HeartConfig
• SetMaxNodesForAdaptivity() : HeartConfig
• SetMaxNumNonzerosIfMatMpiAij() : PetscTools
• SetMaxTransitGenerations() : TissueConfig
• SetMaxUpstrokeVelocityMaps() : HeartConfig
• SetMDuration() : TissueConfig
• SetMechanicsCutOffLength() : TissueConfig
• SetMembraneSurfaceEnergyParameter() : TissueConfig
• SetMesh() : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetMeshFileName() : HeartConfig
• SetMeshFilename() : ArchiveLocationInfo
• SetMeshHasChangedSinceLoading() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• SetMeshPathname() : ArchiveLocationInfo
• SetMeshWidth() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• SetMinEdgeLengthForAdaptivity() : HeartConfig
• SetMinimumGapDuration() : TissueConfig
• SetMutantSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetMutationState() : Mirams2010WntOdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem , TissueCell
• SetNewIndex() : NodeMap , VertexElementMap
• SetNextBoundaryFace() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetNoBirth() : TissueSimulation< DIM >
• SetNode() : MutableMesh< ELEMENT_DIM, SPACE_DIM > , Cylindrical2dMesh , AbstractTissue< DIM > , NodeBasedTissue< DIM > , MeshBasedTissue< DIM >
• SetNodeForAverageOfPhiZeroed() : BidomainProblem< DIM >
• SetNodesPerProcessorFilename() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetNoElectricsOutput() : CardiacElectroMechanicsProblem< DIM >
• SetNonConstantConductivities() : AbstractConductivityTensors< SPACE_DIM >
• SetNonlinearSolver() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• SetNullBasis() : LinearSystem
• SetNumberOfAdaptiveSweeps() : HeartConfig
• SetNumberOfQuadraturePointsPerDimension() : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SetNumberOfTimeSteps() : OdeSolution
• SetNumNodesAndVars() : CellwiseData< DIM >
• SetOdePdeAndPrintingTimeSteps() : HeartConfig
• SetOdeSystemInformation() : OdeSolution
• SetOdeTimeStep() : HeartConfig
• SetOutputCellAges() : TissueConfig
• SetOutputCellAncestors() : TissueConfig
• SetOutputCellAreas() : TissueConfig
• SetOutputCellCyclePhases() : TissueConfig
• SetOutputCellIdData() : TissueConfig
• SetOutputCellMutationStates() : TissueConfig
• SetOutputCellProliferativeTypes() : TissueConfig
• SetOutputCellVariables() : TissueConfig
• SetOutputDirectory() : HeartConfig , TissueSimulation< DIM >
• SetOutputFilenamePrefix() : HeartConfig
• SetOutputNodes() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetOutputNodeVelocities() : TissueConfig
• SetOutputTissueAreas() : MeshBasedTissue< DIM > , TissueConfig
• SetOutputVariables() : HeartConfig
• SetOutputVoronoiData() : TissueConfig , MeshBasedTissue< DIM >
• SetOwnership() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• SetParameter() : AbstractOdeSystem
• SetParameters() : PoleZeroMaterialLaw< DIM >
• SetParametersFile() : HeartConfig
• SetPcType() : LinearSystem
• SetPdeTimeStep() : HeartConfig
• SetPoint() : Node< SPACE_DIM >
• SetPrecision() : LogFile
• SetPrintingTimeStep() : HeartConfig
• SetProteinConcentrationsForTestsOnly() : AbstractOdeBasedCellCycleModel
• SetRegion() : AbstractElement< ELEMENT_DIM, SPACE_DIM > , Node< SPACE_DIM >
• SetRelativeTolerance() : LinearSystem
• SetRhsVectorElement() : LinearSystem
• SetRowForAverageOfPhiZeroed() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• SetSamplingTimestepMultiple() : TissueSimulation< DIM >
• SetScaleFactorAch() : Maleckar2009OdeSystem
• SetScaleFactorAZD() : Maleckar2009OdeSystem
• SetScaleFactorGCaL() : Maleckar2009OdeSystem
• SetScaleFactorGK1() : Maleckar2009OdeSystem
• SetScaleFactorGkr() : FaberRudy2000Version3 , Mahajan2008OdeSystem , Maleckar2009OdeSystem , TenTusscher2006OdeSystem
• SetScaleFactorGks() : FaberRudy2000Version3 , Mahajan2008OdeSystem , Maleckar2009OdeSystem , TenTusscher2006OdeSystem
• SetScaleFactorGKur() : Maleckar2009OdeSystem
• SetScaleFactorGna() : Maleckar2009OdeSystem
• SetScaleFactorGNaCa() : Maleckar2009OdeSystem
• SetScaleFactorGNaK() : Maleckar2009OdeSystem
• SetScaleFactorIto() : TenTusscher2006OdeSystem , Mahajan2008OdeSystem , Maleckar2009OdeSystem , FaberRudy2000Version3
• SetSDuration() : TissueConfig
• SetSheetDimensions() : HeartConfig
• SetSigmaForAdaptivity() : HeartConfig
• SetSimulationDuration() : HeartConfig
• SetSlabDimensions() : HeartConfig
• SetSlowValues() : AbstractCardiacCell
• SetSpaceDimension() : HeartConfig
• SetSpringStiffness() : TissueConfig
• SetStartTime() : SimulationTime
• SetState() : AbstractCardiacCell
• SetStateVariable() : AbstractOdeSystem
• SetStateVariables() : AbstractOdeSystem
• SetStemCellG1Duration() : TissueConfig
• SetStimulusFunction() : AbstractCardiacCell
• SetStretch() : AbstractContractionModel
• SetStretchAndStretchRate() : NonPhysiologicalContractionModel , Kerchoffs2003ContractionModel , Nash2004ContractionModel , NhsContractionModel , AbstractContractionModel
• SetSurfaceAreaToVolumeRatio() : HeartConfig
• SetSurfaceFiles() : StreeterFibreGenerator< SPACE_DIM >
• SetSurfaceTractionBoundaryConditions() : NonlinearElasticityAssembler< DIM >
• SetSymmetricDivisionProbability() : TissueConfig
• SetTargetErrorForAdaptivity() : HeartConfig
• SetTime() : PdeSimulationTime
• SetTimes() : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetTissue() : CellwiseData< DIM > , WntConcentration< DIM >
• SetTolerance() : SimpleNewtonNonlinearSolver
• SetTransitCellG1Duration() : TissueConfig
• SetType() : WntConcentration< DIM >
• setUp() : AbstractCellBasedTestSuite
• SetUpAdditionalStoppingTimes() : BidomainProblem< DIM > , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetupAllLocalBoxes() : BoxCollection< DIM >
• SetUpBoxesOnFineMesh() : FineCoarseMeshPair< DIM >
• SetUpdateTissueRule() : TissueSimulation< DIM >
• SetupLocalBoxesHalfOnly() : BoxCollection< DIM >
• SetupMat() : PetscTools
• SetupSolve() : TissueSimulation< DIM > , CryptSimulation2d
• SetUpstrokeTimeMaps() : HeartConfig
• SetupVectorAndMatrix() : LinearSystem
• setUpWorld() : PetscSetup
• SetupWriteBetaCatenin() : CryptSimulation2d
• SetUseAbsoluteTolerance() : HeartConfig
• SetUseAnalyticalJacobian() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• SetUseCellProliferativeTypeDependentG1Duration() : SimpleWntCellCycleModel
• SetUseFixedSchemaLocation() : HeartConfig
• SetUseRelativeTolerance() : HeartConfig
• SetValue() : CellwiseData< DIM >
• SetVariableFibreSheetDirections() : AbstractCardiacMechanicsAssembler< DIM >
• SetVariableFibreSheetDirectionsFile() : CardiacElectroMechanicsProblem< DIM >
• SetVertex() : Face< DIM >
• SetVisualizeWithCmgui() : HeartConfig
• SetVisualizeWithMeshalyzer() : HeartConfig
• SetVisualizeWithVtk() : HeartConfig
• SetVoltage() : AbstractCardiacCell
• SetWatchedPosition() : CardiacElectroMechanicsProblem< DIM >
• SetWelikyOsterAreaParameter() : TissueConfig
• SetWelikyOsterPerimeterParameter() : TissueConfig
• SetWntChemotaxisStrength() : TissueConfig
• SetWntConcentrationParameter() : TissueConfig
• SetWntLabelledThreshold() : TissueConfig
• SetWntStemThreshold() : TissueConfig
• SetWntTransitThreshold() : TissueConfig
• SetWriteFilesAsBinary() : TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >
• SetWriteInfo() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetWriteOutput() : AbstractNonlinearElasticityAssembler< DIM >
• SetWriteStats() : SimpleNewtonNonlinearSolver
• Shuffle() : RandomNumberGenerator
• SimpleDataWriter() : SimpleDataWriter
• SimpleDg0ParabolicAssembler() : SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE >
• SimpleLinearEllipticAssembler() : SimpleLinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM, CONCRETE >
• SimpleNewtonNonlinearSolver() : SimpleNewtonNonlinearSolver
• SimpleNonlinearEllipticAssembler() : SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• SimpleStimulus() : SimpleStimulus
• SimpleWntCellCycleModel() : SimpleWntCellCycleModel
• SimulateFullActionPotential : AbstractUntemplatedConvergenceTester
• SimulationTime() : SimulationTime
• SingleOdeWntCellCycleModel() : SingleOdeWntCellCycleModel
• Size() : QuadraturePointsGroup< DIM > , VertexElementMap , NodeMap
• SloughingCellKiller() : SloughingCellKiller< DIM >
• slow_time_dependent_potassium_current_g_Ks : TenTusscher2006OdeSystem
• SmoothStructureTensors() : PapillaryFibreCalculator
• sodium_background_current_g_bna : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_alpha : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_gamma : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_K_NaCa : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_K_sat : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_Km_Ca : TenTusscher2006OdeSystem
• sodium_calcium_exchanger_current_Km_Nai : TenTusscher2006OdeSystem
• sodium_channel_g_Na : HodgkinHuxleySquidAxon1952OriginalOdeSystem
• sodium_dynamics_Na_o : TenTusscher2006OdeSystem
• sodium_potassium_pump_current_K_mk : TenTusscher2006OdeSystem
• sodium_potassium_pump_current_K_mNa : TenTusscher2006OdeSystem
• sodium_potassium_pump_current_P_NaK : TenTusscher2006OdeSystem
• Solve() : AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimplePetscNonlinearSolver , AbstractOneStepIvpOdeSolver , AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , ImplicitCardiacMechanicsAssembler< DIM > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , TissueSimulation< DIM > , AbstractIvpOdeSolver , AbstractCardiacMechanicsAssembler< DIM > , RungeKuttaFehlbergIvpOdeSolver , LinearSystem , RungeKuttaFehlbergIvpOdeSolver , CardiacElectroMechanicsProblem< DIM > , ExplicitCardiacMechanicsAssembler< DIM > , AbstractIvpOdeSolver , AbstractNonlinearSolver , SimpleNewtonNonlinearSolver , AbstractOneStepIvpOdeSolver , AbstractNonlinearElasticityAssembler< DIM > , SimpleDg0ParabolicAssembler< ELEMENT_DIM, SPACE_DIM, NON_HEART, CONCRETE > , CardiacNewtonSolver< SIZE >
• SolveAndUpdateStateVariable() : AbstractIvpOdeSolver
• SolveBoundaryElementMapping() : VertexMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• SolveCellSystems() : AbstractCardiacPde< ELEMENT_DIM, SPACE_DIM >
• SolveElementMapping() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SolveLinearSystem() : CardiacNewtonSolver< SIZE > , BackwardEulerIvpOdeSolver
• SolveNodeMapping() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >
• SolveOdeToTime() : WntCellCycleModel , AbstractVanLeeuwen2009WntSwatCellCycleModel , TysonNovakCellCycleModel , AbstractOdeBasedCellCycleModel
• SPACING : ColumnDataWriter , ColumnDataReader
• SpecifyOrdering() : CellMutationStateRegistry
• SplitUpIntoBoxes() : NodeBasedTissue< DIM >
• SpringIterator() : MeshBasedTissue< DIM >::SpringIterator
• SpringsBegin() : MeshBasedTissue< DIM >
• SpringsEnd() : MeshBasedTissue< DIM >
• StandardNormalRandomDeviate() : RandomNumberGenerator
• StartApoptosis() : TissueCell
• StartTime : Timer
• StaticSolve() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• STENCIL_SIZE : NonlinearElasticityAssembler< DIM > , AbstractCardiacMechanicsAssembler< DIM >
• Stimulus : AbstractUntemplatedConvergenceTester
• StimulusBoundaryCondition() : StimulusBoundaryCondition< SPACE_DIM >
• StochasticDurationGenerationBasedCellCycleModel() : StochasticDurationGenerationBasedCellCycleModel
• StochasticWntCellCycleModel() : StochasticWntCellCycleModel
• StoppingEventHasOccurred() : TissueSimulation< DIM >
• StoppingEventOccurred() : AbstractIvpOdeSolver
• StreeterFibreGenerator() : StreeterFibreGenerator< SPACE_DIM >
• Stripe() : DistributedVector::Stripe
• subsystemInformation : CombinedOdeSystemInformation::InstancePointers
• SurfaceBasisFunction : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SwitchOff() : Electrodes< DIM >
• SwitchOn() : Electrodes< DIM >