- r -

• RadialSloughingCellKiller() : RadialSloughingCellKiller
• RampedQuarterStimulusCellFactory() : RampedQuarterStimulusCellFactory< CELL, DIM >
• randMod() : RandomNumberGenerator
• RandomCaSwitchingUpdateRule() : RandomCaSwitchingUpdateRule< DIM >
• RandomCellKiller() : RandomCellKiller< DIM >
• RandomDirectionVertexBasedDivisionRule() : RandomDirectionVertexBasedDivisionRule< SPACE_DIM >
• RandomNumberGenerator() : RandomNumberGenerator
• ranf() : RandomNumberGenerator
• rCalculateModifiedConductivityTensor() : AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > , CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• ReadColumnFromFile() : ColumnDataReader
• ReadElementHeader() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
• ReadFaceHeader() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
• ReadFibreSheetDirectionsFromFile() : ElectroMechanicsProblemDefinition< DIM >
• ReadFile() : HeartConfig
• ReadFileToDomDocument() : XmlTools
• ReadHeaders() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM > , PottsMeshReader< SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
• ReadJunctionsFile() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
• ReadNextToken() : NumericFileComparison
• ReadNodeHeader() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
• ReadNodesPerProcessorFile() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ReadNumLinesOfDataFromFile() : FibreReader< DIM >
• ReadParametersFromFile() : CardiacSimulation
• ReadPetscObject() : PetscTools
• ReadValueFromFile() : ColumnDataReader
• ReadXmlFile() : XmlTools
• ReadyToDivide() : AbstractCellCycleModel , Cell
• ReconstructCylindricalMesh() : Cylindrical2dMesh
• RecordStoppingPoint() : AbstractCvodeSystem , CvodeAdaptor
• RecvObject() : ObjectCommunicator< CLASS >
• RefineElement() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• RefreshHaloCells() : NodeBasedCellPopulation< DIM >
• RefreshJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• RefreshJacobianCachedData() : NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RefreshMesh() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegenerateTables() : AbstractLookupTableCollection
• Register() : Citations
• RegisterBoundaryElement() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterCableElement() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterElement() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterHaloNode() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterNode() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RegisterWithNodes() : AbstractElement< ELEMENT_DIM, SPACE_DIM > , BoundaryElement< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM > , MutableElement< ELEMENT_DIM, SPACE_DIM > , MutableElement< 1, SPACE_DIM >
• RegularStimulus() : RegularStimulus
• RegularStimulusZeroNetCharge() : RegularStimulusZeroNetCharge
• ReIndex() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• ReMesh() : Cylindrical2dMesh , MutableMesh< ELEMENT_DIM, SPACE_DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , NodesOnlyMesh< SPACE_DIM >
• Remove() : FileFinder
• RemoveAllCaSwitchingUpdateRules() : OnLatticeSimulation< DIM >
• RemoveAllCaUpdateRules() : OnLatticeSimulation< DIM >
• RemoveAllCellKillers() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
• RemoveAllCellPopulationBoundaryConditions() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• RemoveAllForces() : OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
• RemoveAllPottsUpdateRules() : OnLatticeSimulation< DIM >
• RemoveAllSwitchingUpdateRules() : CaBasedCellPopulation< DIM >
• RemoveAllUpdateRules() : CaBasedCellPopulation< DIM > , PottsBasedCellPopulation< DIM >
• RemoveBoundaryElement() : Node< SPACE_DIM >
• RemoveCellProperty() : Cell
• RemoveCellUsingLocationIndex() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > , CaBasedCellPopulation< DIM >
• RemoveDeadCells() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > , CaBasedCellPopulation< DIM > , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM > , PottsBasedCellPopulation< DIM > , VertexBasedCellPopulation< SPACE_DIM >
• RemoveDeletedElements() : PottsMesh< DIM >
• RemoveDeletedNodes() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , NodesOnlyMesh< SPACE_DIM >
• RemoveDeletedNodesAndElements() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• RemoveElement() : Node< SPACE_DIM >
• RemoveNode() : Box< DIM >
• RemoveNullSpace() : LinearSystem
• RemovePetscContext() : ReplicatableVector
• RemovePressureDummyValuesThroughLinearInterpolation() : AbstractContinuumMechanicsSolver< DIM >
• RemoveProperty() : CellPropertyCollection
• ReorderNodes() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ReplaceNode() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• ReplaceSpacesWithUnderscores() : FileFinder
• ReplaceUnderscoresWithSpaces() : FileFinder
• ReplicatableVector() : ReplicatableVector
• Replicate() : ReplicatableVector
• ReplicateAdditionalCaches() : ExtendedBidomainTissue< SPACE_DIM >
• ReplicateBool() : PetscTools
• ReplicateCaches() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• ReplicateException() : PetscTools
• ReplicatePetscVector() : ReplicatableVector
• Report() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ReportImpl() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• RepulsionForce() : RepulsionForce< DIM >
• RescaleMeshFromBoundaryNode() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• Reseed() : RandomNumberGenerator
• Reset() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM > , AbstractCellCycleModelOdeSolver , AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
• reset() : boost::random::normal_distribution_v156< RealType >
• Reset() : CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > , GenericEventHandler< NUM_EVENTS, CONCRETE > , GmshMeshReader< ELEMENT_DIM, SPACE_DIM > , HeartConfig , PottsMeshReader< SPACE_DIM > , Timer , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM > , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
• ResetBoundaryConditionsContainer() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ResetCache() : PetscTools
• ResetDirichletCommunication() : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ResetEndTimeAndNumberOfTimeSteps() : SimulationTime
• ResetFiles() : AbstractFileComparison
• ResetForDivision() : AbstractCellCycleModel , AbstractOdeBasedCellCycleModel , AbstractOdeSrnModel , AbstractSimpleCellCycleModel , AbstractSimpleGenerationBasedCellCycleModel , AbstractSrnModel , AbstractWntOdeBasedCellCycleModel , Alarcon2004OxygenBasedCellCycleModel , StochasticOxygenBasedCellCycleModel , StochasticWntCellCycleModel , TysonNovakCellCycleModel
• ResetImpl() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ResetIndex() : BoundaryElement< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM > , MutableElement< ELEMENT_DIM, SPACE_DIM > , MutableElement< 1, SPACE_DIM >
• ResetInterpolatedQuantities() : AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , CellBasedPdeSolver< DIM > , LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ResetKspSolver() : LinearSystem
• ResetMaxCellId() : CellId
• ResetSolver() : AbstractCvodeSystem , CvodeAdaptor
• ResetStatisticsVariables() : FineCoarseMeshPair< DIM >
• ResetStatusCache() : PetscSetupUtils
• ResetTimeStep() : TimeStepper
• ResetToIdentity() : NodeMap , VertexElementMap
• ResetToInitialConditions() : AbstractParameterisedSystem< VECTOR > , AbstractUntemplatedParameterisedSystem
• ResetToNoChangeOfBasisMatrix() : AbstractMaterialLaw< DIM >
• Resize() : NodeMap , ReplicatableVector , VertexElementMap
• ResizeBoxCollection() : NodesOnlyMesh< SPACE_DIM >
• Restore() : DistributedVector
• rGet() : QuadraturePointsGroup< DIM >
• rGetAllCellProperties() : CellPropertyRegistry
• rGetAppliedForce() : Node< SPACE_DIM > , NodeAttributes< SPACE_DIM >
• rGetAttributes() : ElementAttributes< ELEMENT_DIM, SPACE_DIM > , NodeAttributes< SPACE_DIM >
• rGetAvailableSpaces() : CaBasedCellPopulation< DIM >
• rGetBathIdentifiers() : HeartConfig
• rGetBox() : BoxCollection< DIM > , DistributedBoxCollection< DIM >
• rGetCachedVoltages() : PropagationPropertiesCalculator
• rGetCellPopulation() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > , AveragedSourcePde< DIM > , CellwiseSourcePde< DIM > , WntConcentration< DIM >
• rGetCellPropertyCollection() : Cell
• rGetCells() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• rGetCellsDistributed() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetCentre() : ChasteEllipsoid< SPACE_DIM >
• rGetCentreOfSphere() : SphereGeometryBoundaryCondition< DIM >
• rGetCoarseElementsForFineElementCentroids() : FineCoarseMeshPair< DIM >
• rGetCoarseElementsForFineNodes() : FineCoarseMeshPair< DIM >
• rGetConstStateVariables() : AbstractOdeSystem
• rGetContainingBoundaryElementIndices() : Node< SPACE_DIM >
• rGetContainingElementIndices() : Node< SPACE_DIM >
• rGetCurrentSolution() : AbstractContinuumMechanicsSolver< DIM >
• rGetData() : FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• rGetDeformedPosition() : AbstractNonlinearElasticitySolver< DIM > , CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• rGetDependentVariableName() : PdeAndBoundaryConditions< DIM >
• rGetDerivedQuantities() : OdeSolution
• rGetDerivedQuantityNames() : AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetDerivedQuantityUnits() : AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetDirichletBoundaryConditionsVector() : LinearSystem
• rGetDirichletNodes() : ContinuumMechanicsProblemDefinition< DIM >
• rGetDirichletNodeValues() : ContinuumMechanicsProblemDefinition< DIM >
• rGetDistanceMapEndocardium() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapEpicardium() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapLeftVentricle() : HeartGeometryInformation< SPACE_DIM >
• rGetDistanceMapRightVentricle() : HeartGeometryInformation< SPACE_DIM >
• rGetDomainSize() : BoxCollection< DIM > , DistributedBoxCollection< DIM >
• rGetElementAttributes() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• rGetElementsAndWeights() : FineCoarseMeshPair< DIM >
• rGetElementsContained() : Box< DIM >
• rGetElementwiseTractions() : ContinuumMechanicsProblemDefinition< DIM >
• rGetExtracellularConductivityTensor() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > , BidomainTissue< SPACE_DIM > , ExtendedBidomainTissue< SPACE_DIM >
• rGetExtracellularStimulusCacheReplicated() : ExtendedBidomainTissue< SPACE_DIM >
• rGetExtracellularStimulusDistributed() : ExtendedBidomainTissue< SPACE_DIM >
• rGetForceVector() : OdeLinearSystemSolver
• rGetGapsDistributed() : ExtendedBidomainTissue< SPACE_DIM >
• rGetGgapCacheReplicated() : ExtendedBidomainTissue< SPACE_DIM >
• rGetGhostNodes() : MeshBasedCellPopulationWithGhostNodes< DIM >
• rGetGlobalLows() : DistributedVectorFactory
• rGetGradient() : CellwiseDataGradient< DIM >
• rGetHaloBox() : DistributedBoxCollection< DIM >
• rGetHaloNodesLeft() : DistributedBoxCollection< DIM >
• rGetHaloNodesRight() : DistributedBoxCollection< DIM >
• rGetHaloNodesToSendLeft() : NodesOnlyMesh< SPACE_DIM >
• rGetHaloNodesToSendRight() : NodesOnlyMesh< SPACE_DIM >
• rGetIionicCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetIionicCacheReplicatedSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• rGetInitiallyOwnedNodes() : NodesOnlyMesh< SPACE_DIM >
• rGetIntracellularConductivityTensor() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetIntracellularConductivityTensorSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• rGetIntracellularStimulusCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetIntracellularStimulusCacheReplicatedSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• rGetLayerForEachNode() : HeartGeometryInformation< SPACE_DIM >
• rGetLhsMatrix() : LinearSystem , OdeLinearSystemSolver
• rGetLocation() : ChastePoint< DIM > , Node< SPACE_DIM >
• rGetLowerCorner() : ChasteCuboid< SPACE_DIM >
• rGetMesh() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > , CaBasedCellPopulation< DIM > , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM > , PottsBasedCellPopulation< DIM > , VertexBasedCellPopulation< SPACE_DIM >
• rGetMinAndMaxValues() : Box< DIM >
• rGetModifiableLocation() : Node< SPACE_DIM >
• rGetModifiedConductivityTensor() : AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
• rGetNodeAttributes() : Node< SPACE_DIM >
• rGetNodePairs() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM >
• rGetNodePermutation() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
• rGetNodesContained() : Box< DIM >
• rGetNodesList() : ChasteNodesList< SPACE_DIM >
• rGetNodesOnEndoSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnEpiSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnLVSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesOnRVSurface() : HeartGeometryInformation< SPACE_DIM >
• rGetNodesToSendLeft() : NodesOnlyMesh< SPACE_DIM >
• rGetNodesToSendRight() : NodesOnlyMesh< SPACE_DIM >
• rGetNormalToPlane() : PlaneBasedCellKiller< DIM > , PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
• rGetParameterNames() : AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetParameters() : OdeSolution
• rGetParameterUnits() : AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetPdeSolution() : AbstractOdeSystemForCoupledPdeSystem
• rGetPointOnPlane() : PlaneBasedCellKiller< DIM > , PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
• rGetPrecondMatrix() : LinearSystem
• rGetPressures() : AbstractContinuumMechanicsSolver< DIM >
• rGetProjectVersions() : ChasteBuildInfo
• rGetPurkinjeCellsDistributed() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetPurkinjeIionicCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetPurkinjeIntracellularStimulusCacheReplicated() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• rGetQuadPoint() : GaussianQuadratureRule< ELEMENT_DIM >
• rGetQuadPointToDataAtQuadPointMap() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
• rGetRadii() : ChasteEllipsoid< SPACE_DIM >
• rGetRhsVector() : LinearSystem
• rGetSecondCellsDistributed() : ExtendedBidomainTissue< SPACE_DIM >
• rGetSolutions() : OdeSolution
• rGetSpatialSolution() : AbstractContinuumMechanicsSolver< DIM > , AbstractNonlinearElasticitySolver< DIM > , StokesFlowSolver< DIM >
• rGetStateVariableNames() : AbstractCardiacCell , AbstractCardiacCellInterface , AbstractCvodeCell , AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetStateVariables() : AbstractParameterisedSystem< VECTOR >
• rGetStateVariableUnits() : AbstractOdeSystemInformation , AbstractUntemplatedParameterisedSystem
• rGetSwitchingUpdateRuleCollection() : CaBasedCellPopulation< DIM >
• rGetTimes() : OdeSolution
• rGetTissueIdentifiers() : HeartConfig
• rGetTractionBoundaryElements() : ContinuumMechanicsProblemDefinition< DIM >
• rGetUpdateRuleCollection() : CaBasedCellPopulation< DIM > , PottsBasedCellPopulation< DIM >
• rGetUpperCorner() : ChasteCuboid< SPACE_DIM >
• rGetVelocities() : StokesFlowSolver< DIM >
• Rotate() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• RotateX() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• RotateY() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• RotateZ() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• Run() : CardiacSimulation
• RunAndUpdate() : AbstractAlgebraicContractionModel , AbstractContractionModel , AbstractOdeBasedContractionModel , NhsModelWithBackwardSolver
• RunDoNotUpdate() : AbstractAlgebraicContractionModel , AbstractContractionModel , AbstractOdeBasedContractionModel , NhsModelWithBackwardSolver
• RungeKutta2IvpOdeSolver() : RungeKutta2IvpOdeSolver
• RungeKuttaFehlbergIvpOdeSolver() : RungeKuttaFehlbergIvpOdeSolver
• RunToSteadyState() : AbstractSteadyStateRunner
• RunToSteadyStateImplementation() : AbstractSteadyStateRunner , SteadyStateRunner