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Chaste
Release::3.4
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- g -
- GammaDistributedStochasticDurationCellCycleModel()
: GammaDistributedStochasticDurationCellCycleModel
- GammaRandomDeviate()
: RandomNumberGenerator
- GaussianQuadratureRule()
: GaussianQuadratureRule< ELEMENT_DIM >
- GeneralisedLinearSpringForce()
: GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GeneralPlaneStimulusCellFactory()
: GeneralPlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
- Generate()
: CryptCellsGenerator< CELL_CYCLE_MODEL >
- GenerateBasic()
: CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateBasicRandom()
: CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateGivenLocationIndices()
: CellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateListOfDatasets()
: AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
- GenerateNullBasis()
: AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- GenerateParallelCells()
: ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
- GenerateStochasticG2Duration()
: StochasticOxygenBasedCellCycleModel
, StochasticWntCellCycleModel
- GenerateVectorsOfElementsStraddlingPeriodicBoundaries()
: Cylindrical2dMesh
- GenerateVerticesFromElementCircumcentres()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GenericEventHandler()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GeometricPartitioning()
: NodePartitioner< ELEMENT_DIM, SPACE_DIM >
- Get()
: CellPropertyRegistry
, ProcessSpecificArchive< Archive >
- Get_d2W_dI1()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI1I2()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI1I3()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_d2W_dI2()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_d2W_dI2I3()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_d2W_dI3()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
- Get_dW_dI1()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI2()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
, ExponentialMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
, PolynomialMaterialLaw3d
- Get_dW_dI3()
: AbstractIsotropicCompressibleMaterialLaw< DIM >
, CompressibleMooneyRivlinMaterialLaw< DIM >
- GetA()
: CompressibleExponentialLaw< DIM >
, CryptProjectionForce
, ExponentialMaterialLaw< DIM >
, OdeSystemForCoupledHeatEquationWithSource
, SchmidCostaExponentialLaw2d
- GetAbsoluteMovementThreshold()
: AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetAbsolutePath()
: FileFinder
- GetAbsoluteTemperature()
: DiffusionForce< DIM >
- GetAbsoluteTolerance()
: AbstractCvodeSystem
, CvodeAdaptor
, HeartConfig
- GetActionPotentialAmplitudes()
: CellProperties
- GetActiveTension()
: AbstractContractionModel
, ConstantActiveTension
, FakeBathContractionModel
, Kerchoffs2003ContractionModel
, Nash2004ContractionModel
, NhsContractionModel
, NonPhysiologicalContractionModel
- GetActiveTensionAndTensionDerivs()
: AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
, ExplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
, ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
- GetAdhesionEnergyParameter()
: BuskeAdhesiveForce< DIM >
- GetAdhesionParameter()
: NagaiHondaDifferentialAdhesionForce< DIM >
, NagaiHondaForce< DIM >
- GetAge()
: AbstractCellCycleModel
, Cell
- GetAllActionPotentialDurations()
: CellProperties
- GetAllAxi()
: FibreReader< DIM >
- GetAllOrtho()
: FibreReader< DIM >
- GetAlpha()
: PolynomialMaterialLaw3d
- GetAmFirstCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetAmGap()
: ExtendedBidomainTissue< SPACE_DIM >
- GetAmSecondCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetAncestor()
: Cell
, CellAncestor
- GetAngleBetweenNodes()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetAnyVariable()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
, AbstractParameterisedSystem< VECTOR >
, OdeSolution
- GetAnyVariableIndex()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetAnyVariableUnits()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetApdMaps()
: HeartConfig
- GetApoptosisTime()
: Cell
- GetApoptoticSpringCompressionStiffness()
: LinearSpringWithVariableSpringConstantsForce< DIM >
- GetApoptoticSpringTensionStiffness()
: LinearSpringWithVariableSpringConstantsForce< DIM >
- GetApplyCrossFibreTension()
: ElectroMechanicsProblemDefinition< DIM >
- GetArchiveBoundingBox()
: ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
- GetArchiveDirectory()
: ArchiveLocationInfo
- GetArchivedSimulationDir()
: HeartConfig
- GetArchiveRelativePath()
: ArchiveLocationInfo
- GetAreaBasedDampingConstantParameter()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetAreaElasticityParameter()
: FarhadifarForce< DIM >
- GetAreaGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetAreLocalBoxesSet()
: DistributedBoxCollection< DIM >
- GetAspectRatio()
: PottsElement< DIM >
- GetAttribute()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetAveragedThicknessLocalNode()
: StreeterFibreGenerator< SPACE_DIM >
- GetAverageStemCellCycleTime()
: AbstractCellCycleModel
, AbstractWntOdeBasedCellCycleModel
, TysonNovakCellCycleModel
- GetAverageStressPerElement()
: AbstractNonlinearElasticitySolver< DIM >
- GetAverageTransitCellCycleTime()
: AbstractCellCycleModel
, AbstractWntOdeBasedCellCycleModel
, TysonNovakCellCycleModel
- GetB()
: CompressibleExponentialLaw< DIM >
, CryptProjectionForce
, ExponentialMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GetBathConductivity()
: HeartConfig
- GetBetaCateninConcentration()
: SingleOdeWntCellCycleModel
- GetBetaCateninDivisionThreshold()
: SingleOdeWntCellCycleModel
- GetBetaCatSpringScaler()
: LinearSpringWithVariableSpringConstantsForce< DIM >
- GetBidomainTissue()
: BidomainProblem< DIM >
- GetBirthTime()
: AbstractCellCycleModel
, Cell
- GetBloodLust()
: TargetedCellKiller< DIM >
- GetBodyForce()
: ContinuumMechanicsProblemDefinition< DIM >
- GetBodyForceType()
: ContinuumMechanicsProblemDefinition< DIM >
- GetBoolCorrespondingToOption()
: CommandLineArguments
- GetBoundaryCondition()
: PdeAndBoundaryConditions< DIM >
- GetBoundaryConditions()
: AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryConditionsContainer()
: Electrodes< DIM >
- GetBoundaryElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorBegin()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryElementIteratorEnd()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryLineTensionParameter()
: FarhadifarForce< DIM >
- GetBoundaryNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoundaryNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetBoxCollection()
: NodesOnlyMesh< SPACE_DIM >
- GetBoxOwnership()
: DistributedBoxCollection< DIM >
- GetBoxWidth()
: DistributedBoxCollection< DIM >
- GetBuilderUnameInfo()
: ChasteBuildInfo
- GetBuildInfo()
: ExecutableSupport
- GetBuildInformation()
: ChasteBuildInfo
- GetBuildTime()
: ChasteBuildInfo
- GetC()
: Goldbeter1991SrnModel
- GetC1()
: CompressibleMooneyRivlinMaterialLaw< DIM >
, MooneyRivlinMaterialLaw< DIM >
- GetC2()
: MooneyRivlinMaterialLaw< DIM >
- GetC3()
: CompressibleMooneyRivlinMaterialLaw< DIM >
- GetCaBasedDivisionRule()
: CaBasedCellPopulation< DIM >
- GetCableElement()
: MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCableElementIteratorBegin()
: MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCableElementIteratorEnd()
: MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCablesAtNode()
: MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetCalciumTroponinValue()
: NhsContractionModel
- GetCallCount()
: MockEulerIvpOdeSolver
- GetCapacitance()
: HeartConfig
- GetCarbonMonoxideScaleFactor()
: CorriasBuistICCModified
, CorriasBuistSMCModified
- GetCardiacCell()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetCardiacCellOrHaloCell()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetCardiacSecondCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetCell()
: AbstractCellCycleModel
, AbstractSrnModel
- GetCellA()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
- GetCellAncestors()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellB()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
- GetCellBasedPdeHandler()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetCellBoundaryAdhesionEnergy()
: AdhesionPottsUpdateRule< DIM >
, DifferentialAdhesionPottsUpdateRule< DIM >
- GetCellBoundaryAdhesionEnergyParameter()
: AdhesionPottsUpdateRule< DIM >
- GetCellCellAdhesionEnergy()
: AdhesionPottsUpdateRule< DIM >
, DifferentialAdhesionPottsUpdateRule< DIM >
- GetCellCellAdhesionEnergyParameter()
: AdhesionPottsUpdateRule< DIM >
- GetCellCount()
: AbstractCellProperty
- GetCellCycleModel()
: Cell
- GetCellCyclePhaseCount()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellData()
: Cell
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetCellDataForVtkOutput()
: AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
, CellAgesWriter< ELEMENT_DIM, SPACE_DIM >
, CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >
, CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >
, CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >
, CellDeltaNotchWriter< ELEMENT_DIM, SPACE_DIM >
, CellIdWriter< ELEMENT_DIM, SPACE_DIM >
, CellLabelWriter< ELEMENT_DIM, SPACE_DIM >
, CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >
, CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >
, CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >
, CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >
, CellRadiusWriter< ELEMENT_DIM, SPACE_DIM >
, CellRosetteRankWriter< ELEMENT_DIM, SPACE_DIM >
, CellVolumesWriter< ELEMENT_DIM, SPACE_DIM >
- GetCellHeterogeneities()
: HeartConfig
- GetCellId()
: Cell
, CellId
- GetCellIdsOfT2Swaps()
: VertexBasedCellPopulation< SPACE_DIM >
- GetCellLocationIndices()
: HoneycombMeshGenerator
- GetCellMutationStateCount()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellNodePair()
: NodeBasedCellPopulation< DIM >
- GetCellPopulation()
: AbstractCellKiller< SPACE_DIM >
, AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
, CellBasedPdeHandler< DIM >
- GetCellProliferativeType()
: Cell
- GetCellProliferativeTypeCount()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellPropertyRegistry()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CellPropertyCollection
- GetCellRearrangementRatio()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCellRearrangementThreshold()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCellsUsingLocationIndex()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCellUsingLocationIndex()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
- GetCellVecData()
: Cell
- GetCentre()
: RadialSloughingCellKiller
- GetCentroidOfCellPopulation()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetCentroidOfElement()
: PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetChasteTestOutputDirectory()
: OutputFileHandler
- GetCheckForInternalIntersections()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetCheckpointSimulation()
: HeartConfig
- GetCheckpointTimestep()
: HeartConfig
- GetChemotacticForceMagnitude()
: ChemotacticForce< DIM >
- GetChildElements()
: XmlTools
- GetCircularMesh()
: HoneycombMeshGenerator
- GetCmFirstCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetCmSecondCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetCoarseMesh()
: FineCoarseMeshPair< DIM >
- GetCoarsePdeMesh()
: CellBasedPdeHandler< DIM >
- GetCoefficient()
: AveragedSourcePde< DIM >
, CellwiseSourcePde< DIM >
, SimpleUniformSourcePde< DIM >
- GetColour()
: AbstractCellMutationState
, AbstractCellProliferativeType
, ApoptoticCellProperty
, CellLabel
- GetCommonArchive()
: ArchiveOpener< Archive, Stream >
- GetCompilerFlags()
: ChasteBuildInfo
- GetCompilerType()
: ChasteBuildInfo
- GetCompilerVersion()
: ChasteBuildInfo
- GetCompressibilityParam()
: CompressibleExponentialLaw< DIM >
- GetCompressibilityType()
: SolidMechanicsProblemDefinition< DIM >
- GetCompressibleMaterialLaw()
: SolidMechanicsProblemDefinition< DIM >
- GetCompressionEnergyParameter()
: BuskeCompressionForce< DIM >
- GetConductionVelocityMaps()
: HeartConfig
- GetConductivityHeterogeneities()
: HeartConfig
- GetConductivityHeterogeneitiesProvided()
: HeartConfig
- GetConductivityMedia()
: HeartConfig
- GetConstantBodyForce()
: ContinuumMechanicsProblemDefinition< DIM >
- GetContainingElementIndex()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndexWithInitialGuess()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetContainingElementIndices()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetContractionCellFactory()
: ElectroMechanicsProblemDefinition< DIM >
- GetContractionModelOdeTimestep()
: ElectroMechanicsProblemDefinition< DIM >
- GetCorrespondingNodeIndex()
: Cylindrical2dMesh
- GetCreateFibre()
: HeartConfig
- GetCreateMesh()
: HeartConfig
- GetCreateSheet()
: HeartConfig
- GetCreateSlab()
: HeartConfig
- GetCriticalHypoxicDuration()
: SimpleOxygenBasedCellCycleModel
- GetCryptLength()
: WntConcentration< DIM >
- GetCryptProjectionParameterA()
: WntConcentration< DIM >
- GetCryptProjectionParameterB()
: WntConcentration< DIM >
- GetCryptSection()
: CryptProjectionStatistics
, CryptStatistics
- GetCryptSectionPeriodic()
: CryptStatistics
- GetCurrentCellCyclePhase()
: AbstractCellCycleModel
- GetCurrentHypoxiaOnsetTime()
: SimpleOxygenBasedCellCycleModel
- GetCurrentHypoxicDuration()
: SimpleOxygenBasedCellCycleModel
- GetCurrentQuiescentDuration()
: ContactInhibitionCellCycleModel
- GetCurrentQuiescentOnsetTime()
: ContactInhibitionCellCycleModel
- GetCurrentSolutionOrGuessValue()
: AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- GetCurrentTime()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, ChasteBuildInfo
- GetCutOffLength()
: AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
- GetCycleLengths()
: CellProperties
- GetCylindricalMesh()
: CylindricalHoneycombMeshGenerator
, CylindricalHoneycombVertexMeshGenerator
- GetCytoplasmicBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetDampingConstant()
: AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetDampingConstantMutant()
: AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetDampingConstantNormal()
: AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetDataReader()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDeathProbabilityInAnHour()
: RandomCellKiller< DIM >
- GetDefaultIonicModel()
: HeartConfig
- GetDeformationAffectsCellModels()
: ElectroMechanicsProblemDefinition< DIM >
- GetDeformationAffectsConductivity()
: ElectroMechanicsProblemDefinition< DIM >
- GetDeformationEnergyParameter()
: BuskeElasticForce< DIM >
, SurfaceAreaConstraintPottsUpdateRule< DIM >
, VolumeConstraintPottsUpdateRule< DIM >
- GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetDelta()
: DeltaNotchSrnModel
- GetDensity()
: ContinuumMechanicsProblemDefinition< DIM >
- GetDerivedQuantityIndex()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetDerivedQuantityUnits()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetDiffusionParameter()
: DiffusionCaUpdateRule< DIM >
- GetDiffusionScalingConstant()
: DiffusionForce< DIM >
- GetDimension()
: AbstractCellCycleModel
- GetDirichletBCValue()
: AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetDistanceBetweenNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDistanceToEndo()
: HeartGeometryInformation< SPACE_DIM >
- GetDistanceToEpi()
: HeartGeometryInformation< SPACE_DIM >
- GetDistributedVectorFactory()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetDoCacheReplication()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetDomain()
: HeartConfig
- GetDomainDepth()
: HoneycombMeshGenerator
- GetDomainWidth()
: HoneycombMeshGenerator
- GetDoubleCorrespondingToOption()
: CommandLineArguments
- GetDoublesCorrespondingToOption()
: CommandLineArguments
- GetDrugDose()
: HeartConfig
- GetDt()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
, CellCycleModelOdeHandler
- GetDuration()
: RegularStimulus
- GetEdgeData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetEdgeLength()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElapsedTime()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
, Timer
- GetElapsedTimeImpl()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- GetElectrodeParameters()
: HeartConfig
- GetElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, PetscMatTools
, PetscVecTools
, PottsBasedCellPopulation< DIM >
, PottsMesh< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementCentroidStrain()
: AbstractNonlinearElasticitySolver< DIM >
- GetElementCorrespondingToCell()
: PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetElementData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorBegin()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementIteratorEnd()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetElementTessellation()
: PottsBasedCellPopulation< DIM >
- GetElongationShapeFactorOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetEndoLayerFraction()
: HeartConfig
- GetEndoLayerIndex()
: HeartConfig
- GetEpiLayerFraction()
: HeartConfig
- GetEpiLayerIndex()
: HeartConfig
- GetEquilibriumVolume()
: ContactInhibitionCellCycleModel
- GetEvaluateNumItsEveryNSolves()
: HeartConfig
- GetExperimentalVoltageAtTimeT()
: AbstractCvodeCellWithDataClamp
- GetExtendedBidomainTissue()
: ExtendedBidomainProblem< DIM >
- GetExtension()
: FileFinder
- GetExtracellularConductivities()
: HeartConfig
- GetExtracellularStimulus()
: ExtendedBidomainTissue< SPACE_DIM >
- GetExtremalAngles()
: DiscreteSystemForceCalculator
- GetFace()
: VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetFaceData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetFactory()
: DistributedVector
, DistributedVector::Stripe
- GetFakeIccStimulusPresent()
: CorriasBuistSMCModified
- GetFibreLength()
: HeartConfig
- GetFibreMaxAngle()
: StreeterFibreGenerator< SPACE_DIM >
- GetFibreSheetAndNormalMatrix()
: FibreReader< DIM >
- GetFibreSheetDirectionsDefinedPerQuadraturePoint()
: ElectroMechanicsProblemDefinition< DIM >
- GetFibreSheetDirectionsFile()
: ElectroMechanicsProblemDefinition< DIM >
- GetFibreVector()
: FibreReader< DIM >
- GetFieldWidth()
: ColumnDataReader
- GetFileName()
: AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
- GetFineMesh()
: FineCoarseMeshPair< DIM >
- GetFirstAttribute()
: ElementAttributes< ELEMENT_DIM, SPACE_DIM >
- GetForceStrength()
: VertexCryptBoundaryForce< DIM >
- GetFreeVariableName()
: AbstractOdeSystemInformation
- GetFreeVariableUnits()
: AbstractOdeSystemInformation
- GetG1Duration()
: AbstractCellCycleModel
- GetG2Duration()
: AbstractCellCycleModel
, StochasticOxygenBasedCellCycleModel
, StochasticWntCellCycleModel
, TysonNovakCellCycleModel
- GetGeneration()
: AbstractSimpleGenerationBasedCellCycleModel
- GetGGap()
: ExtendedBidomainTissue< SPACE_DIM >
- GetGhostNodeIndices()
: MeshBasedCellPopulationWithGhostNodes< DIM >
- GetGridIndices()
: BoxCollection< DIM >
- GetHaloBoxOwnership()
: DistributedBoxCollection< DIM >
- GetHaloNodeIndices()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHaloNodeIteratorBegin()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHaloNodeIteratorEnd()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetHasBath()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, BidomainProblem< DIM >
, ExtendedBidomainProblem< DIM >
- GetHeartGeometryInformation()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetHeartRegion()
: HeartGeometryInformation< SPACE_DIM >
- GetHeterotypicSpringConstantMultiplier()
: DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetHigh()
: DistributedVector
, DistributedVectorFactory
- GetHomotypicLabelledSpringConstantMultiplier()
: DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetHypothesis()
: VanLeeuwen2009WntSwatCellCycleOdeSystem
- GetHypoxicConcentration()
: SimpleOxygenBasedCellCycleModel
- GetIc50Values()
: HeartConfig
- GetIdealTimeStep()
: TimeStepper
- GetIdentifier()
: Identifiable
- GetIIonic()
: AbstractCardiacCellInterface
, CML_noble_varghese_kohl_noble_1998_basic_with_sac
, CorriasBuistICCModified
, CorriasBuistSMCModified
, FakeBathCell
, FitzHughNagumo1961OdeSystem
- GetImposeBcsOnCoarseBoundary()
: CellBasedPdeHandler< DIM >
- GetIncompleteNodeMap()
: AbstractHdf5Access
- GetIncompressibleMaterialLaw()
: SolidMechanicsProblemDefinition< DIM >
- GetIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::ElementIterator
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::NodeIterator
, Node< SPACE_DIM >
- GetIndexForArgument()
: CommandLineArguments
- GetInitialConditions()
: AbstractOdeSystemInformation
, AbstractParameterisedSystem< VECTOR >
- GetInstanceOfMismatchedBoundaryNodes()
: Cylindrical2dMesh
- GetIntCorrespondingToOption()
: CommandLineArguments
- GetIntegrand()
: AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetInterNodeSpace()
: HeartConfig
- GetIntracellularAreaStimulus()
: AbstractCardiacCellInterface
- GetIntracellularCalciumConcentration()
: AbstractCardiacCellInterface
, CML_noble_varghese_kohl_noble_1998_basic_with_sac
, FakeBathCell
- GetIntracellularConductivities()
: HeartConfig
- GetIntracellularConductivitiesSecondCell()
: ExtendedBidomainTissue< SPACE_DIM >
- GetIntracellularStimulus()
: AbstractCardiacCellInterface
- GetIntsCorrespondingToOption()
: CommandLineArguments
- GetInverseJacobianForElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetIonicModelRegions()
: HeartConfig
- GetIsDirRelativeToChasteTestOutput()
: ArchiveLocationInfo
- GetItem()
: CellData
, CellVecData
- GetIterateRandomlyOverUpdateRuleCollection()
: AbstractOnLatticeCellPopulation< DIM >
- GetJacobianForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetKeyingVariableNames()
: AbstractLookupTableCollection
- GetKeys()
: CellData
, CellVecData
- GetKSPPreconditioner()
: HeartConfig
- GetKSPSolver()
: HeartConfig
- GetLabelledCellBoundaryAdhesionEnergyParameter()
: DifferentialAdhesionPottsUpdateRule< DIM >
- GetLabelledCellCellAdhesionEnergyParameter()
: DifferentialAdhesionPottsUpdateRule< DIM >
- GetLabelledCellLabelledCellAdhesionEnergyParameter()
: DifferentialAdhesionPottsUpdateRule< DIM >
- GetLastActionPotentialAmplitude()
: CellProperties
- GetLastActionPotentialDuration()
: CellProperties
- GetLastCompleteMaxUpstrokeVelocity()
: CellProperties
- GetLastCompletePeakPotential()
: CellProperties
- GetLastMaxUpstrokeVelocity()
: CellProperties
- GetLastPeakPotential()
: CellProperties
- GetLastRestingPotential()
: CellProperties
- GetLastStepSize()
: AbstractCvodeSystem
, CvodeAdaptor
- GetLastT2SwapLocation()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLeafName()
: FileFinder
- GetLeafNameNoExtension()
: FileFinder
- GetLhsMatrix()
: LinearSystem
- GetLicenceText()
: ChasteBuildInfo
- GetLinearIndex()
: BoxCollection< DIM >
- GetLinearSystem()
: AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetLineTensionParameter()
: FarhadifarForce< DIM >
- GetLoadableModulePath()
: DynamicCellModelLoader
- GetLoader()
: AbstractDynamicallyLoadableEntity
, DynamicModelLoaderRegistry
- GetLoadMesh()
: HeartConfig
- GetLocalBoxes()
: BoxCollection< DIM >
, DistributedBoxCollection< DIM >
- GetLocalExtremum()
: DiscreteSystemForceCalculator
- GetLocalIndexForElementEdgeClosestToPoint()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocalOwnership()
: DistributedVectorFactory
- GetLocationIndexUsingCell()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetLocationOfCellCentre()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetLocationsOfT1Swaps()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLocationsOfT2Swaps()
: VertexBasedCellPopulation< SPACE_DIM >
- GetLocationsOfT3Swaps()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetLongestAxis()
: ChasteCuboid< SPACE_DIM >
- GetLookupTableCollection()
: AbstractCardiacCellInterface
- GetLow()
: DistributedVector
, DistributedVectorFactory
- GetM()
: Goldbeter1991SrnModel
- GetMagnitude()
: RegularStimulus
- GetMagnitudeOfForce()
: BuskeAdhesiveForce< DIM >
, BuskeElasticForce< DIM >
- GetMajorReleaseNumber()
: ChasteBuildInfo
- GetMatrixElement()
: LinearSystem
- GetMatrixRowDistributed()
: LinearSystem
, PetscMatTools
- GetMatureCellTargetSurfaceArea()
: SurfaceAreaConstraintPottsUpdateRule< DIM >
- GetMatureCellTargetVolume()
: VolumeConstraintPottsUpdateRule< DIM >
- GetMaxCellId()
: CellId
- GetMaxCheckpointsOnDisk()
: HeartConfig
- GetMaximumInteractionDistance()
: NodesOnlyMesh< SPACE_DIM >
- GetMaximumNodeIndex()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NodesOnlyMesh< SPACE_DIM >
- GetMaxNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMaxSteps()
: AbstractCvodeSystem
, CvodeAdaptor
- GetMaxTransitGenerations()
: AbstractSimpleGenerationBasedCellCycleModel
- GetMaxUpstrokeVelocities()
: CellProperties
- GetMaxUpstrokeVelocityMaps()
: HeartConfig
- GetMDuration()
: AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetMeanNeighbouringDelta()
: DeltaNotchSrnModel
- GetMechanicsCutOffLength()
: NodeBasedCellPopulation< DIM >
- GetMechanicsSolver()
: CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
- GetMechanicsSolveTimestep()
: ElectroMechanicsProblemDefinition< DIM >
- GetMeinekeDivisionRestingSpringLength()
: GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeDivisionSeparation()
: AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeSpringGrowthDuration()
: GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMeinekeSpringStiffness()
: GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
- GetMembraneBoundBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetMesh()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
, AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
, CylindricalHoneycombMeshGenerator
, CylindricalHoneycombVertexMeshGenerator
, HoneycombMeshGenerator
, HoneycombVertexMeshGenerator
, PottsMeshGenerator< DIM >
, ToroidalHoneycombVertexMeshGenerator
- GetMeshFileBaseName()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMeshFilename()
: ArchiveLocationInfo
- GetMeshForVtk()
: Cylindrical2dVertexMesh
, Toroidal2dVertexMesh
- GetMeshName()
: HeartConfig
- GetMeshNum()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetMeshPartitioning()
: HeartConfig
- GetMessage()
: Exception
- GetMidLayerFraction()
: HeartConfig
- GetMidLayerIndex()
: HeartConfig
- GetMinimumGapDuration()
: AbstractCellCycleModel
- GetMinNodeIndex()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetMinorReleaseNumber()
: ChasteBuildInfo
- GetMixedDimensionMesh()
: AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
- GetModifier()
: AbstractCardiacCellWithModifiers< CARDIAC_CELL >
- GetMonodomainTissue()
: MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
- GetMooreNeighbouringNodeIndices()
: PottsMesh< DIM >
- GetMutableMesh()
: PottsBasedCellPopulation< DIM >
- GetMutationState()
: Cell
, Mirams2010WntOdeSystem
, VanLeeuwen2009WntSwatCellCycleOdeSystem
, WntCellCycleOdeSystem
- GetMyRank()
: PetscTools
- GetNagaiHondaCellBoundaryAdhesionEnergyParameter()
: NagaiHondaForce< DIM >
- GetNagaiHondaCellCellAdhesionEnergyParameter()
: NagaiHondaForce< DIM >
- GetNagaiHondaDeformationEnergyParameter()
: NagaiHondaForce< DIM >
- GetNagaiHondaLabelledCellBoundaryAdhesionEnergyParameter()
: NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaLabelledCellCellAdhesionEnergyParameter()
: NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaLabelledCellLabelledCellAdhesionEnergyParameter()
: NagaiHondaDifferentialAdhesionForce< DIM >
- GetNagaiHondaMembraneSurfaceEnergyParameter()
: NagaiHondaForce< DIM >
- GetNearestElementIndex()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNearestElementIndexFromTestElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNearestNodeIndex()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringElementIndices()
: PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringLocationIndices()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, MeshBasedCellPopulationWithGhostNodes< DIM >
, PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetNeighbouringNodeIndices()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractOnLatticeCellPopulation< DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeighbouringNodeNotAlsoInElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNeumannBCValue()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetNewIndex()
: NodeMap
, VertexElementMap
- GetNextActiveTension()
: AbstractAlgebraicContractionModel
, AbstractContractionModel
, Kerchoffs2003ContractionModel
, Nash2004ContractionModel
, NhsContractionModel
, NhsModelWithBackwardSolver
- GetNextAvailableIndex()
: NodesOnlyMesh< SPACE_DIM >
- GetNextBoundaryElement()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextCableElement()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextCableElementData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextEdgeData()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextEdgeGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNextElement()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
, PottsMeshWriter< DIM >
, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextElementData()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextElementDataWithFaces()
: VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextElementWithFaces()
: VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNextFaceData()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextItemFromStream()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextLineFromStream()
: PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextNode()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, PottsMeshWriter< DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNextTime()
: PdeSimulationTime
, TimeStepper
- GetNextTimeStep()
: AbstractTimeAdaptivityController
, TimeStepper
- GetNextWarningMessage()
: Warnings
- GetNodalTimeTraceRequested()
: HeartConfig
- GetNode()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
, PottsBasedCellPopulation< DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetNodeA()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
- GetNodeAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeB()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
- GetNodeCorrespondingToCell()
: AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
- GetNodeFromPrePermutationIndex()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNodeGlobalIndex()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorBegin()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeIteratorEnd()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNodeLocalIndex()
: MutableElement< ELEMENT_DIM, SPACE_DIM >
, MutableElement< 1, SPACE_DIM >
- GetNodeLocation()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetNodeOrHaloNode()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NodesOnlyMesh< SPACE_DIM >
- GetNodesAtSurface()
: HeartGeometryInformation< SPACE_DIM >
- GetNodesByComponentValue()
: NonlinearElasticityTools< DIM >
- GetNodesWithinNeighbourhoodRadius()
: NodeBasedCellPopulation< DIM >
- GetNormalPressure()
: ContinuumMechanicsProblemDefinition< DIM >
- GetNotch()
: DeltaNotchSrnModel
- GetNuclearBetaCateninLevel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- GetNumAllBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllCells()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetNumAllElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumAllNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfAboveThresholdDepolarisationsForAllAps()
: CellProperties
- GetNumberOfAboveThresholdDepolarisationsForLastAp()
: CellProperties
- GetNumberOfArgumentsForOption()
: CommandLineArguments
- GetNumberOfAttributes()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetNumberOfCells()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
, AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
- GetNumberOfDerivedQuantities()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetNumberOfParameters()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
, AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetNumberOfRows()
: Hdf5DataReader
- GetNumberOfStateVariables()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
, AbstractUntemplatedParameterisedSystem
- GetNumberOfTables()
: AbstractLookupTableCollection
- GetNumberOfTimeSteps()
: OdeSolution
- GetNumBirths()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetNumBoundaryFaces()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetNumBoundaryNodes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumBoxes()
: BoxCollection< DIM >
, DistributedBoxCollection< DIM >
- GetNumCableElementAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumCableElements()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumContainingElements()
: Node< SPACE_DIM >
- GetNumDeaths()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetNumEdges()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElementAttributes()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumElements()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
, PottsBasedCellPopulation< DIM >
, PottsMesh< DIM >
, PottsMeshReader< SPACE_DIM >
, QuadraturePointsGroup< DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexBasedCellPopulation< SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumEvaluations()
: AbstractSteadyStateRunner
- GetNumFaceAttributes()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumFaces()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumHaloNodes()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumIncrementsForInitialDeformation()
: ElectroMechanicsProblemDefinition< DIM >
- GetNumItems()
: CellData
, CellVecData
- GetNumIterations()
: LinearSystem
- GetNumLinesOfData()
: FibreReader< DIM >
- GetNumLocalBoundaryElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalBoxes()
: DistributedBoxCollection< DIM >
- GetNumLocalCableElements()
: MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalElements()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalNodes()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetNumLocalRows()
: DistributedBoxCollection< DIM >
- GetNumNewtonIterations()
: AbstractNonlinearElasticitySolver< DIM >
- GetNumNodeAttributes()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, Node< SPACE_DIM >
- GetNumNodes()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractElement< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, CmguiDeformedSolutionsWriter< DIM >
, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
, NodesOnlyMesh< SPACE_DIM >
, PottsBasedCellPopulation< DIM >
, PottsMesh< DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexBasedCellPopulation< SPACE_DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetNumProcs()
: DistributedVectorFactory
, PetscTools
- GetNumQuadPoints()
: GaussianQuadratureRule< ELEMENT_DIM >
- GetNumQuadPointsPerElement()
: QuadraturePointsGroup< DIM >
- GetNumRadialIntervals()
: CellBasedPdeHandler< DIM >
- GetNumRealCells()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetNumRowsOfBoxes()
: DistributedBoxCollection< DIM >
- GetNumS2FrequencyValues()
: S1S2Stimulus
- GetNumSlowValues()
: AbstractCardiacCell
- GetNumSweepsPerTimestep()
: PottsBasedCellPopulation< DIM >
- GetNumVertices()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, QuadraticMesh< DIM >
- GetNumWarnings()
: Warnings
- GetOdeSolver()
: CellCycleModelOdeHandler
- GetOdeStopTime()
: AbstractOdeBasedCellCycleModel
- GetOdeSystem()
: CellCycleModelOdeHandler
- GetOdeSystemAtNode()
: LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetOdeTimeStep()
: HeartConfig
- GetOneDimBoundary()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOpenMode()
: CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
, MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfBoundaryElements()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOrderOfElements()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetOriginalFactory()
: DistributedVectorFactory
- GetOutputCellRearrangementLocations()
: VertexBasedCellPopulation< SPACE_DIM >
- GetOutputCellVelocities()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputDirectory()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
, ColumnDataWriter
, HeartConfig
- GetOutputDirectoryFullPath()
: OutputFileHandler
- GetOutputDivisionLocations()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputFilenamePrefix()
: HeartConfig
- GetOutputMeshInVtk()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputResultsForChasteVisualizer()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetOutputUsingOriginalNodeOrdering()
: HeartConfig
- GetOutputVariables()
: HeartConfig
- GetOutputVariablesProvided()
: HeartConfig
- GetOwnership()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetOwnershipRange()
: LinearSystem
, PetscMatTools
, PetscVecTools
- GetOxygenConcentration()
: Alarcon2004OxygenBasedCellCycleOdeSystem
- GetParameter()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
, AbstractParameterisedSystem< VECTOR >
- GetParameterIndex()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetParametersFilePath()
: HeartConfig
- GetParameterUnits()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetParent()
: FileFinder
- GetParticleIndices()
: NodeBasedCellPopulationWithParticles< DIM >
- GetPartitionType()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetPde()
: PdeAndBoundaryConditions< DIM >
- GetPdeSolution()
: CellBasedPdeHandler< DIM >
- GetPdeSolutionAtPoint()
: CellBasedPdeHandler< DIM >
- GetPdeSolutionSize()
: AbstractOdeSystemForCoupledPdeSystem
- GetPdeTimeStep()
: HeartConfig
, PdeSimulationTime
- GetPdeTimeStepInverse()
: PdeSimulationTime
- GetPeakPotentials()
: CellProperties
- GetPerimeterContractilityParameter()
: FarhadifarForce< DIM >
- GetPerimeterGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPeriod()
: RegularStimulus
- GetPoint()
: Node< SPACE_DIM >
- GetPointData()
: VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetPreviousEdgeGradientOfElementAtNode()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetPrintingTimeStep()
: HeartConfig
- GetProblemSize()
: DistributedVectorFactory
- GetProcessOwningNode()
: DistributedBoxCollection< DIM >
- GetProcessRegion()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetProcessUniqueFilePath()
: ArchiveLocationInfo
- GetProperties()
: CellPropertyCollection
- GetPropertiesType()
: CellPropertyCollection
- GetProperty()
: CellPropertyCollection
- GetProteinConcentrations()
: AbstractOdeBasedCellCycleModel
- GetProtorosetteFormationProbability()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetProtorosetteResolutionProbabilityPerTimestep()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetProvenanceString()
: ChasteBuildInfo
- GetPseudoEcgElectrodePositions()
: HeartConfig
- GetPurkinjeCapacitance()
: HeartConfig
- GetPurkinjeCell()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- GetPurkinjeConductivity()
: HeartConfig
- GetPurkinjeSurfaceAreaToVolumeRatio()
: HeartConfig
- GetQuadratureRule()
: AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
, AbstractCardiacMechanicsSolverInterface< DIM >
- GetQuiescentConcentration()
: SimpleOxygenBasedCellCycleModel
- GetQuiescentVolumeFraction()
: ContactInhibitionCellCycleModel
- GetRadius()
: Node< SPACE_DIM >
, NodeAttributes< SPACE_DIM >
, RadialSloughingCellKiller
- GetRadiusOfSphere()
: SphereGeometryBoundaryCondition< DIM >
- GetRadiusVectorForOneElement()
: PapillaryFibreCalculator
- GetRadiusVectors()
: PapillaryFibreCalculator
- GetRate()
: ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel
- GetRawDataFromFile()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetReadContainingElementOfBoundaryElement()
: AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- GetReceivedCells()
: NodeBasedCellPopulation< DIM >
- GetRecvObject()
: ObjectCommunicator< CLASS >
- GetReferenceTargetArea()
: AbstractTargetAreaModifier< DIM >
- GetRegion()
: Node< SPACE_DIM >
, NodeAttributes< SPACE_DIM >
- GetRegionsToBeGrounded()
: AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
- GetRelativePath()
: FileFinder
, OutputFileHandler
- GetRelativeTolerance()
: AbstractCvodeSystem
, CvodeAdaptor
, HeartConfig
- GetRestingPotentials()
: CellProperties
- GetRestLength()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetRevisionNumber()
: ChasteBuildInfo
- GetRhsVector()
: LinearSystem
- GetRhsVectorElement()
: LinearSystem
- GetRootDir()
: ChasteBuildInfo
- GetRosetteRankOfCell()
: VertexBasedCellPopulation< SPACE_DIM >
- GetRosetteRankOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetRosetteResolutionProbabilityPerTimestep()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetSamplingAngles()
: DiscreteSystemForceCalculator
- GetSavedProblem()
: CardiacSimulation
- GetScale()
: GammaDistributedStochasticDurationCellCycleModel
- GetSDuration()
: AbstractCellCycleModel
, TysonNovakCellCycleModel
- GetSerializationWrapper()
: SerializableSingleton< SINGLETON_CLASS >
- GetSG2MDuration()
: AbstractCellCycleModel
- GetShape()
: GammaDistributedStochasticDurationCellCycleModel
- GetSheetDimensions()
: HeartConfig
- GetSheetNormalTensionFraction()
: ElectroMechanicsProblemDefinition< DIM >
- GetSheetTensionFraction()
: ElectroMechanicsProblemDefinition< DIM >
- GetShortAxisOfElement()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetShortMessage()
: Exception
- GetSimulatedToTime()
: AbstractSrnModel
- GetSimulationDuration()
: HeartConfig
- GetSimulationModifiers()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetSize()
: CellPropertyCollection
, ChasteNodesList< SPACE_DIM >
, LinearSystem
, NodeMap
, PetscMatTools
, PetscVecTools
, ReplicatableVector
- GetSizeOfCellPopulation()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
- GetSizeOfOdeSystem()
: AbstractCellCycleModelOdeSolver
- GetSlabDimensions()
: HeartConfig
- GetSloughHeight()
: SloughingCellKiller< DIM >
- GetSloughSides()
: SloughingCellKiller< DIM >
- GetSloughWidth()
: SloughingCellKiller< DIM >
- GetSlowValues()
: AbstractCardiacCell
- GetSolution()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, PdeAndBoundaryConditions< DIM >
- GetSolutionDistributedVector()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetSolver()
: AbstractCardiacCellInterface
- GetSolverName()
: OdeSolution
- GetSolverType()
: ElectroMechanicsProblemDefinition< DIM >
- GetSolveUsingSnes()
: SolidMechanicsProblemDefinition< DIM >
- GetSpaceDimension()
: HeartConfig
- GetSpaceStep()
: SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GetSrnModel()
: Cell
- GetStartOfApoptosisTime()
: Cell
- GetStartTime()
: RegularStimulus
- GetStateMessage()
: AbstractParameterisedSystem< VECTOR >
- GetStateVariable()
: AbstractParameterisedSystem< VECTOR >
- GetStateVariableIndex()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetStateVariables()
: AbstractOdeSrnModel
, AbstractParameterisedSystem< VECTOR >
- GetStateVariableUnits()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetStdVecStateVariables()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
- GetStemCellG1Duration()
: AbstractCellCycleModel
- GetStiffnessMatrixGlobalIndices()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralElement< 0, SPACE_DIM >
- GetStimuli()
: HeartConfig
- GetStimulus()
: AbstractCardiacCellInterface
, AbstractStimulusFunction
, MultiStimulus
, PurkinjeVentricularJunctionStimulus
, RegularStimulus
, RegularStimulusZeroNetCharge
, S1S2Stimulus
, SimpleStimulus
, ZeroStimulus
- GetStimulusFunction()
: AbstractCardiacCellInterface
- GetStoppingTime()
: AbstractCellCycleModelOdeSolver
, AbstractIvpOdeSolver
- GetStretch()
: CML_noble_varghese_kohl_noble_1998_basic_with_sac
- GetStringCorrespondingToOption()
: CommandLineArguments
- GetStringsCorrespondingToOption()
: CommandLineArguments
- GetSubdirectory()
: AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceArea()
: TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaOfElement()
: PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaOfVoronoiElement()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetSurfaceAreaToVolumeRatio()
: HeartConfig
- GetSwitchingParameter()
: RandomCaSwitchingUpdateRule< DIM >
- GetSwitchOffTime()
: Electrodes< DIM >
- GetSwitchOnTime()
: Electrodes< DIM >
- GetSystemInformation()
: AbstractUntemplatedParameterisedSystem
- GetSystemName()
: AbstractOdeSystemInformation
, AbstractUntemplatedParameterisedSystem
- GetSystemSize()
: BackwardEulerIvpOdeSolver
- GetT2Threshold()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetTableIndex()
: AbstractLookupTableCollection
- GetTableProperties()
: AbstractLookupTableCollection
- GetTargetIndex()
: TargetedCellKiller< DIM >
- GetTemperature()
: PottsBasedCellPopulation< DIM >
- GetTetrahedralMeshUsingVertexMesh()
: VertexBasedCellPopulation< SPACE_DIM >
- GetTime()
: PdeSimulationTime
, SimulationTime
, TimeStepper
- GetTimeAtLastCompleteMaxUpstrokeVelocity()
: CellProperties
- GetTimeAtLastMaxUpstrokeVelocity()
: CellProperties
- GetTimesAtMaxUpstrokeVelocity()
: CellProperties
- GetTimestep()
: AbstractCvodeCell
- GetTimeStep()
: OdeLinearSystemSolver
, SimulationTime
- GetTimeStepsElapsed()
: SimulationTime
- GetTimeUntilDeath()
: Cell
- GetTissue()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- GetTokensAtNextLine()
: FibreReader< DIM >
- GetToroidalMesh()
: ToroidalHoneycombVertexMeshGenerator
- GetTotalNumQuadPoints()
: AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
, AbstractCardiacMechanicsSolverInterface< DIM >
- GetTotalTimeStepsTaken()
: TimeStepper
- GetTractionBoundaryConditionType()
: ContinuumMechanicsProblemDefinition< DIM >
- GetTransitCellG1Duration()
: AbstractCellCycleModel
- GetType()
: WntConcentration< DIM >
- GetUnit()
: Hdf5DataReader
- GetUnlimitedDimensionName()
: AbstractHdf5Access
- GetUnlimitedDimensionUnit()
: AbstractHdf5Access
- GetUnlimitedDimensionValues()
: ColumnDataReader
, Hdf5DataReader
- GetUnsignedAttribute()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- GetUnsignedCorrespondingToOption()
: CommandLineArguments
- GetUnsignedsCorrespondingToOption()
: CommandLineArguments
- GetUpdateCellPopulationRule()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- GetUpdateNodesInRandomOrder()
: AbstractOnLatticeCellPopulation< DIM >
- GetUpstrokeTimeMaps()
: HeartConfig
- GetUptakeRateForElement()
: AveragedSourcePde< DIM >
- GetUseAbsoluteTolerance()
: HeartConfig
- GetUseAnalyticJacobian()
: AbstractCvodeSystem
, AbstractOdeSystem
- GetUseCutOffLength()
: AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
- GetUseFixedNumberIterationsLinearSolver()
: HeartConfig
- GetUseJiggledBottomCells()
: CryptSimulationBoundaryCondition< DIM >
- GetUseJiggledNodesOnPlane()
: PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
- GetUseMassLumping()
: HeartConfig
- GetUseMassLumpingForPrecond()
: HeartConfig
- GetUseReactionDiffusionOperatorSplitting()
: HeartConfig
- GetUseRelativeTolerance()
: HeartConfig
- GetUseStateVariableInterpolation()
: HeartConfig
- GetUseVariableRadii()
: NodeBasedCellPopulation< DIM >
- GetValidBathId()
: HeartRegionCode
- GetValidTissueId()
: HeartRegionCode
- GetValue()
: AbstractBoundaryCondition< SPACE_DIM >
, ConstBoundaryCondition< SPACE_DIM >
, FunctionalBoundaryCondition< SPACE_DIM >
, StimulusBoundaryCondition< SPACE_DIM >
- GetValueCorrespondingToOption()
: CommandLineArguments
- GetValues()
: AbstractDataReader
, ColumnDataReader
- GetVariableAtIndex()
: OdeSolution
- GetVariableByName()
: Hdf5DataWriter
- GetVariableNames()
: Hdf5DataReader
- GetVariableOverNodes()
: Hdf5DataReader
- GetVariableOverTime()
: Hdf5DataReader
- GetVariableOverTimeOverMultipleNodes()
: Hdf5DataReader
- GetVectorFromAtoB()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
, Cylindrical2dNodesOnlyMesh
, Cylindrical2dVertexMesh
, Toroidal2dVertexMesh
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVectorIndex()
: FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
- GetVerboseDuringSolve()
: ContinuumMechanicsProblemDefinition< DIM >
- GetVersionFromNamespace()
: HeartConfig
- GetVersionString()
: ChasteBuildInfo
- GetVertexBasedDivisionRule()
: VertexBasedCellPopulation< SPACE_DIM >
- GetViscosity()
: DiffusionForce< DIM >
, StokesFlowProblemDefinition< DIM >
- GetVisualizerOutputPrecision()
: HeartConfig
- GetVisualizeWithCmgui()
: HeartConfig
- GetVisualizeWithMeshalyzer()
: HeartConfig
- GetVisualizeWithParallelVtk()
: HeartConfig
- GetVisualizeWithVtk()
: HeartConfig
- GetVoltage()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
- GetVoltageIndex()
: AbstractCardiacCellInterface
- GetVolume()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetVolumeOfCell()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
, PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- GetVolumeOfElement()
: PottsMesh< DIM >
, VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVolumeOfVoronoiElement()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVonNeumannNeighbouringNodeIndices()
: PottsMesh< DIM >
- GetVoronoiEdgeLength()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiElementIndexCorrespondingToDelaunayNodeIndex()
: VertexMesh< ELEMENT_DIM, SPACE_DIM >
- GetVoronoiTessellation()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetVtkCellDataName()
: AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
- GetWallTime()
: Timer
- GetWeight()
: GaussianQuadratureRule< ELEMENT_DIM >
- GetWeightedDirectionForBoundaryElement()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWeightedDirectionForElement()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- GetWelikyOsterAreaParameter()
: WelikyOsterForce< DIM >
- GetWelikyOsterPerimeterParameter()
: WelikyOsterForce< DIM >
- GetWidth()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, ChasteCuboid< SPACE_DIM >
, CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
, Cylindrical2dNodesOnlyMesh
, Cylindrical2dVertexMesh
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, NodeBasedCellPopulation< DIM >
, NodesOnlyMesh< SPACE_DIM >
, PottsBasedCellPopulation< DIM >
, Toroidal2dVertexMesh
, VertexBasedCellPopulation< SPACE_DIM >
- GetWithDefault()
: ChastePoint< DIM >
- GetWntChemotaxisStrength()
: CryptProjectionForce
- GetWntConcentrationParameter()
: WntConcentration< DIM >
- GetWntGradient()
: WntConcentration< DIM >
- GetWntLabelledThreshold()
: SimpleWntCellCycleModel
- GetWntLevel()
: AbstractWntOdeBasedCellCycleModel
, Mirams2010WntOdeSystem
, SimpleWntCellCycleModel
, VanLeeuwen2009WntSwatCellCycleOdeSystem
, WntCellCycleOdeSystem
, WntConcentration< DIM >
- GetWntStemThreshold()
: SimpleWntCellCycleModel
- GetWntTransitThreshold()
: SimpleWntCellCycleModel
- GetWntType()
: SimpleWntCellCycleModel
- GetWorld()
: PetscTools
- GetWriteAverageRadialPdeSolution()
: CellBasedPdeHandler< DIM >
- GetWriteDailyAverageRadialPdeSolution()
: CellBasedPdeHandler< DIM >
- GetWriteVtkAsPoints()
: MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
- GetX()
: Goldbeter1991SrnModel
- GetXsdVersion()
: ChasteBuildInfo
- GetZeroedAlpha()
: PolynomialMaterialLaw3d
- GetZeroStrainPressure()
: AbstractIncompressibleMaterialLaw< DIM >
, AbstractIsotropicIncompressibleMaterialLaw< DIM >
, PoleZeroMaterialLaw< DIM >
, SchmidCostaExponentialLaw2d
- GiveUpConvergence()
: AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- GmshMeshReader()
: GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
- Goldbeter1991OdeSystem()
: Goldbeter1991OdeSystem
- Goldbeter1991SrnModel()
: Goldbeter1991SrnModel
- GRL1IvpOdeSolver()
: GRL1IvpOdeSolver
- GRL2IvpOdeSolver()
: GRL2IvpOdeSolver
- GroundSecondElectrode()
: ElectrodesStimulusFactory< DIM >