- c -

• CaBasedCellPopulation() : CaBasedCellPopulation< DIM >
• CacheData() : AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::ElementIterator , AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::NodeIterator
• CaclulateNeighbouringNodeIndices() : PottsMeshGenerator< DIM >
• Calc() : AbstractModifier , DummyModifier , FactorModifier , FixedModifier , TimeModifier
• Calculate() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateAboveThresholdDepolarisationsForLastAp() : PropagationPropertiesCalculator
• CalculateActionPotentialDuration() : PropagationPropertiesCalculator
• CalculateActionPotentialDurations() : CellProperties
• CalculateAllAboveThresholdDepolarisations() : PropagationPropertiesCalculator
• CalculateAllActionPotentialDurations() : PropagationPropertiesCalculator
• CalculateAllActionPotentialDurationsForNodeRange() : PropagationPropertiesCalculator
• CalculateAllConductionVelocities() : PropagationPropertiesCalculator
• CalculateAllMaximumUpstrokeVelocities() : PropagationPropertiesCalculator
• CalculateAreaOfFace() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateBackwardEulerResidual() : NhsModelWithBackwardSolver
• CalculateBoundaryNodePairs() : DistributedBoxCollection< DIM > , NodesOnlyMesh< SPACE_DIM >
• CalculateBoundingBox() : AbstractMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateBoundingBoxOfEndo() : HeartGeometryInformation< SPACE_DIM >
• CalculateBoundingBoxOfEpi() : HeartGeometryInformation< SPACE_DIM >
• CalculateBoundingBoxOfLV() : HeartGeometryInformation< SPACE_DIM >
• CalculateBoundingBoxOfRV() : HeartGeometryInformation< SPACE_DIM >
• CalculateBoundingBoxOfSurface() : HeartGeometryInformation< SPACE_DIM >
• CalculateCalciumTrop50() : NhsContractionModel
• CalculateCaTropAndZDerivatives() : NhsModelWithBackwardSolver
• CalculateCellDivisionVector() : AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > , AbstractVertexBasedDivisionRule< SPACE_DIM > , CryptSimulation1d , CryptSimulation2d , DiagonalVertexBasedDivisionRule< SPACE_DIM > , OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM > , OnLatticeSimulation< DIM > , RandomDirectionVertexBasedDivisionRule< SPACE_DIM > , ShortAxisVertexBasedDivisionRule< SPACE_DIM >
• CalculateCentroid() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalculateChunkDims() : Hdf5DataWriter
• CalculateCircumsphere() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateCircumsphereVolume() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateConductionVelocity() : PropagationPropertiesCalculator
• CalculateContainingBox() : BoxCollection< DIM > , DistributedBoxCollection< DIM >
• CalculateCoordinateIndices() : DistributedBoxCollection< DIM >
• CalculateCryptSurfaceDerivativeAtPoint() : CryptProjectionForce
• CalculateCryptSurfaceHeightAtPoint() : CryptProjectionForce
• CalculateDaughterNodeIndex() : AbstractCaBasedDivisionRule< DIM > , ExclusionCaBasedDivisionRule< SPACE_DIM >
• CalculateDerivedQuantitiesAndParameters() : OdeSolution
• CalculateDesignatedOwnershipOfBoundaryElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateDesignatedOwnershipOfCableElement() : MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateDesignatedOwnershipOfElement() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateExtremalNormalForces() : DiscreteSystemForceCalculator
• CalculateFibreOrientations() : PapillaryFibreCalculator
• CalculateForceBetweenGhostNodes() : MeshBasedCellPopulationWithGhostNodes< DIM >
• CalculateForceBetweenNodes() : AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM > , BuskeAdhesiveForce< DIM > , BuskeElasticForce< DIM > , CryptProjectionForce , GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
• CalculateFtAndFn() : DiscreteSystemForceCalculator
• CalculateGlobalIndex() : DistributedBoxCollection< DIM >
• CalculateHaloNodesFromNodeExchange() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• CalculateInteriorNodePairs() : DistributedBoxCollection< DIM > , NodesOnlyMesh< SPACE_DIM >
• CalculateInterpolationWeights() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInterpolationWeightsWithProjection() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateInverseJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateJacobian() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• CalculateMaximumContainingElementsPerProcess() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateMaximumNodeConnectivityPerProcess() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateMaximumUpstrokeVelocity() : PropagationPropertiesCalculator
• CalculateMinMaxEdgeLengths() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , Element< ELEMENT_DIM, SPACE_DIM >
• CalculateMomentsOfElement() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateNextTime() : TimeStepper
• CalculateNextYValue() : AbstractOneStepIvpOdeSolver , BackwardEulerIvpOdeSolver , EulerIvpOdeSolver , GRL1IvpOdeSolver , GRL2IvpOdeSolver , HeunIvpOdeSolver , RungeKutta2IvpOdeSolver , RungeKutta4IvpOdeSolver , RungeKuttaFehlbergIvpOdeSolver
• CalculateNodeExchange() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateNodePairs() : BoxCollection< DIM > , DistributedBoxCollection< DIM >
• CalculateNodesOutsideLocalDomain() : NodesOnlyMesh< SPACE_DIM >
• CalculateNormal() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalculateNumberOfChunks() : Hdf5DataWriter
• CalculateNumberOfNodesInEachStrip() : DistributedBoxCollection< DIM >
• CalculateOnElement() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateOwnership() : DistributedVectorFactory
• CalculatePeakMembranePotential() : PropagationPropertiesCalculator
• CalculateProperties() : CellProperties
• CalculateQuality() : Element< ELEMENT_DIM, SPACE_DIM >
• CalculateRelativeWallPosition() : HeartGeometryInformation< SPACE_DIM >
• CalculateResidualNorm() : AbstractNonlinearElasticitySolver< DIM >
• CalculateRestLengths() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CalculateRootFunction() : AbstractOdeSystem , TysonNovak2001OdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
• CalculateStoppingEvent() : AbstractOdeSystem , Alarcon2004OxygenBasedCellCycleOdeSystem , TysonNovak2001OdeSystem , VanLeeuwen2009WntSwatCellCycleOdeSystem , WntCellCycleOdeSystem
• CalculateT0() : NhsContractionModel
• CalculateUnitNormalToFaceWithArea() : VertexMesh< ELEMENT_DIM, SPACE_DIM >
• CalculateUpstrokeTimes() : PropagationPropertiesCalculator
• CalculateWeightedDirection() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• CalculateXi() : Element< ELEMENT_DIM, SPACE_DIM >
• CanCellTerminallyDifferentiate() : AbstractCellCycleModel , AbstractWntOdeBasedCellCycleModel , SimpleWntCellCycleModel , TysonNovakCellCycleModel
• CardiacElectroMechanicsProblem() : CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
• CardiacElectroMechProbRegularGeom() : CardiacElectroMechProbRegularGeom< DIM >
• CardiacNewtonSolver() : CardiacNewtonSolver< SIZE, CELLTYPE >
• CardiacSimulation() : CardiacSimulation
• Cell() : Cell
• CellAgesWriter() : CellAgesWriter< ELEMENT_DIM, SPACE_DIM >
• CellAncestor() : CellAncestor
• CellAncestorWriter() : CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >
• CellBasedPdeHandler() : CellBasedPdeHandler< DIM >
• CellBasedPdeHandlerOnCuboid() : CellBasedPdeHandlerOnCuboid< DIM >
• CellBasedPdeSolver() : CellBasedPdeSolver< DIM >
• CellBetaCateninWriter() : CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >
• CellCycleModelOdeHandler() : CellCycleModelOdeHandler
• CellCycleModelOdeSolver() : CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > , CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
• CellCycleModelProteinConcentrationsWriter() : CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >
• CellDeltaNotchWriter() : CellDeltaNotchWriter< ELEMENT_DIM, SPACE_DIM >
• CellId() : CellId
• CellIdWriter() : CellIdWriter< ELEMENT_DIM, SPACE_DIM >
• CellIsInSection() : CryptProjectionStatistics , CryptStatistics
• CellIsInSectionPeriodic() : CryptStatistics
• CellLabel() : CellLabel
• CellLabelWriter() : CellLabelWriter< ELEMENT_DIM, SPACE_DIM >
• CellLocationIndexWriter() : CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >
• CellMLLoader() : CellMLLoader
• CellMLToSharedLibraryConverter() : CellMLToSharedLibraryConverter
• CellMutationStatesCountWriter() : CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >
• CellMutationStatesWriter() : CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >
• CellPopulationAdjacencyMatrixWriter() : CellPopulationAdjacencyMatrixWriter< ELEMENT_DIM, SPACE_DIM >
• CellPopulationAreaWriter() : CellPopulationAreaWriter< ELEMENT_DIM, SPACE_DIM >
• CellPopulationElementWriter() : CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >
• CellProliferativePhasesCountWriter() : CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >
• CellProliferativePhasesWriter() : CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >
• CellProliferativeTypesCountWriter() : CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >
• CellProliferativeTypesWriter() : CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >
• CellProperties() : CellProperties
• CellPropertyCollection() : CellPropertyCollection
• CellPropertyRegistry() : CellPropertyRegistry
• CellRadiusWriter() : CellRadiusWriter< ELEMENT_DIM, SPACE_DIM >
• CellRosetteRankWriter() : CellRosetteRankWriter< ELEMENT_DIM, SPACE_DIM >
• CellVecData() : CellVecData
• CellVolumesWriter() : CellVolumesWriter< ELEMENT_DIM, SPACE_DIM >
• CellwiseOdeSystemInformation() : CellwiseOdeSystemInformation< ODE_SYSTEM >
• CellwiseSourcePde() : CellwiseSourcePde< DIM >
• ChangeCellProliferativeTypeDueToCurrentBetaCateninLevel() : AbstractVanLeeuwen2009WntSwatCellCycleModel , AbstractWntOdeBasedCellCycleModel , SingleOdeWntCellCycleModel , WntCellCycleModel
• CHASTE_VERSION_CONTENT() : boost::serialization::version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > > , boost::serialization::version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > > , boost::serialization::version< AbstractChasteRegion< SPACE_DIM > > , boost::serialization::version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > >
• ChasteCuboid() : ChasteCuboid< SPACE_DIM >
• ChasteEllipsoid() : ChasteEllipsoid< SPACE_DIM >
• ChasteNodesList() : ChasteNodesList< SPACE_DIM >
• ChastePoint() : ChastePoint< DIM > , ChastePoint< 0 >
• CheckAndLabelCellsForApoptosisOrDeath() : AbstractCellKiller< SPACE_DIM > , ApoptoticCellKiller< SPACE_DIM > , IsolatedLabelledCellKiller< DIM > , PlaneBasedCellKiller< DIM > , RadialSloughingCellKiller , RandomCellKiller< DIM > , SloughingCellKiller< DIM > , T2SwapCellKiller< DIM > , TargetedCellKiller< DIM >
• CheckAndLabelSingleCellForApoptosis() : ApoptoticCellKiller< SPACE_DIM > , RandomCellKiller< DIM >
• CheckBoundaryElements() : QuadraticMeshHelper< DIM >
• CheckCache() : PetscTools
• CheckCastSuccess() : SolidMechanicsProblemDefinition< DIM >
• CheckCellPointers() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CheckCompatibilityCondition() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > , AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• CheckEquality() : PetscMatTools
• CheckExceededThreshold() : CellProperties
• CheckFiles() : ColumnDataReader
• CheckForArchiveFix() : AbstractCardiacCell
• CheckForElectrodesIntersection() : ElectrodesStimulusFactory< DIM >
• CheckForIluPreconditioner() : XmlTransforms
• CheckForIntersections() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• CheckForNodeAttributes() : Node< SPACE_DIM >
• CheckForPetsc() : DistributedVectorFactory
• CheckForRosettes() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• CheckForStoppingEvents() : AbstractCellCycleModelOdeSolver , CvodeAdaptor
• CheckForSwapsFromShortEdges() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• CheckForT2Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• CheckIsConforming() : TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CheckIsVoronoi() : MutableMesh< ELEMENT_DIM, SPACE_DIM >
• CheckNumberOfProcessesOnLoad() : DistributedVectorFactory
• CheckOutwardNormals() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• CheckParametersOnLoad() : AbstractParameterisedSystem< VECTOR >
• CheckResumeSimulationIsDefined() : HeartConfig
• CheckReturnedToThreshold() : CellProperties
• CheckShortMessage() : Exception
• CheckShortMessageContains() : Exception
• CheckSimulationIsDefined() : HeartConfig
• CheckSymmetry() : PetscMatTools
• CheckTimeSteps() : HeartConfig
• CheckUnitsName() : ColumnDataWriter , Hdf5DataWriter
• CheckVariableName() : ColumnDataWriter , Hdf5DataWriter
• ChemotacticForce() : ChemotacticForce< DIM >
• ChemotaxisPottsUpdateRule() : ChemotaxisPottsUpdateRule< DIM >
• Chunk() : DistributedVector::Chunk
• Clear() : AbstractStimulusFunction , CellPropertyRegistry , MultiStimulus , MutableMesh< ELEMENT_DIM, SPACE_DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , NodeBasedCellPopulation< DIM > , NodesOnlyMesh< SPACE_DIM > , PottsMesh< DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , VertexMesh< ELEMENT_DIM, SPACE_DIM >
• ClearAppliedForce() : Node< SPACE_DIM > , NodeAttributes< SPACE_DIM >
• ClearBoxCollection() : NodesOnlyMesh< SPACE_DIM >
• ClearHaloNodes() : NodesOnlyMesh< SPACE_DIM >
• ClearLocationsAndCellIdsOfT2Swaps() : VertexBasedCellPopulation< SPACE_DIM >
• ClearLocationsOfT1Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• ClearLocationsOfT3Swaps() : MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• ClearNodes() : Box< DIM >
• Close() : AbstractDataWriter , ColumnDataWriter , Hdf5DataReader , Hdf5DataWriter , LogFile , ParallelColumnDataWriter
• CloseFile() : AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
• CloseFiles() : GmshMeshReader< ELEMENT_DIM, SPACE_DIM > , PottsMeshReader< SPACE_DIM > , TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM > , VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
• CloseFilesAndPostProcess() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CloseResultsFiles() : CellBasedPdeHandler< DIM >
• CloseRoundRobinWritersFiles() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CloseWritersFiles() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CmguiDeformedSolutionsWriter() : CmguiDeformedSolutionsWriter< DIM >
• CmguiMeshWriter() : CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
• CML_noble_varghese_kohl_noble_1998_basic_with_sac() : CML_noble_varghese_kohl_noble_1998_basic_with_sac
• CollectElementsInContainingBox() : FineCoarseMeshPair< DIM >
• CollectElementsInLocalBoxes() : FineCoarseMeshPair< DIM >
• ColumnDataReader() : ColumnDataReader
• ColumnDataWriter() : ColumnDataWriter
• CombinedOdeSystem() : CombinedOdeSystem
• CombinedOdeSystemInformation() : CombinedOdeSystemInformation
• CommandLineArguments() : CommandLineArguments
• CommandLineArgumentsMocker() : CommandLineArgumentsMocker
• CommonConstructor() : Hdf5DataReader , Node< SPACE_DIM > , OutputFileHandler , VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
• CommonFinalize() : PetscSetupUtils
• CommonSetup() : PetscSetupUtils
• CompareFiles() : FileComparison , NumericFileComparison
• CompressibleExponentialLaw() : CompressibleExponentialLaw< DIM >
• CompressibleMooneyRivlinMaterialLaw() : CompressibleMooneyRivlinMaterialLaw< DIM >
• CompressibleNonlinearElasticitySolver() : CompressibleNonlinearElasticitySolver< DIM >
• Compute() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractBackwardEulerCardiacCell< 0u > , AbstractCardiacCell , AbstractCardiacCellInterface , AbstractCvodeCell , AbstractGeneralizedRushLarsenCardiacCell , AbstractRushLarsenCardiacCell
• Compute1stPiolaKirchoffStress() : AbstractMaterialLaw< DIM >
• Compute2ndPiolaKirchoffStress() : AbstractMaterialLaw< DIM >
• ComputeBasisFunction() : LinearBasisFunction< ELEMENT_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEMENT_DIM > , QuadraticBasisFunction< 0 >
• ComputeBasisFunctionDerivative() : LinearBasisFunction< ELEMENT_DIM > , QuadraticBasisFunction< ELEMENT_DIM >
• ComputeBasisFunctionDerivatives() : LinearBasisFunction< ELEMENT_DIM > , QuadraticBasisFunction< ELEMENT_DIM >
• ComputeBasisFunctions() : LinearBasisFunction< ELEMENT_DIM > , LinearBasisFunction< 0 > , QuadraticBasisFunction< ELEMENT_DIM > , QuadraticBasisFunction< 0 >
• ComputeCableMatrixTerm() : AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• ComputeCableVectorTerm() : AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• ComputeCauchyStress() : AbstractMaterialLaw< DIM >
• ComputeCoarseElementForGivenPoint() : FineCoarseMeshPair< DIM >
• ComputeCoarseElementsForFineElementCentroids() : FineCoarseMeshPair< DIM >
• ComputeCoarseElementsForFineNodes() : FineCoarseMeshPair< DIM >
• ComputeConstantInUSourceTerm() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AveragedSourcePde< DIM > , CellwiseSourcePde< DIM > , SimpleUniformSourcePde< DIM >
• ComputeConstantInUSourceTermAtNode() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• ComputeDeformationGradientAndStretchInEachElement() : AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM > , AbstractCardiacMechanicsSolverInterface< DIM >
• ComputeDerivedQuantities() : AbstractParameterisedSystem< VECTOR >
• ComputeDerivedQuantitiesFromCurrentState() : AbstractParameterisedSystem< VECTOR >
• ComputeDiffusionTerm() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM > , AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractNonlinearEllipticPde< SPACE_DIM > , AveragedSourcePde< DIM > , CellwiseSourcePde< DIM > , SimpleUniformSourcePde< DIM >
• ComputeDiffusionTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeDistanceMap() : DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
• ComputeDuDtCoefficientFunction() : AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM > , AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeElectrodesAreasAndCheckEquality() : Electrodes< DIM >
• ComputeElectrodeTotalFlux() : ElectrodesStimulusFactory< DIM >
• ComputeExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractBackwardEulerCardiacCell< 0u > , AbstractCardiacCell , AbstractCardiacCellInterface , AbstractCvodeCell , AbstractGeneralizedRushLarsenCardiacCell , AbstractRushLarsenCardiacCell , FakeBathCell
• ComputeFineElementAndWeightForGivenPoint() : FineCoarseMeshPair< DIM >
• ComputeFineElementsAndWeightsForCoarseNodes() : FineCoarseMeshPair< DIM >
• ComputeFineElementsAndWeightsForCoarseQuadPoints() : FineCoarseMeshPair< DIM >
• ComputeIncompleteOffset() : Hdf5DataWriter
• ComputeJacobian() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractNonlinearElasticitySolver< DIM > , BackwardEulerIvpOdeSolver
• ComputeJacobianNumerically() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeLinearInUCoeffInSourceTerm() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , AveragedSourcePde< DIM > , CellwiseSourcePde< DIM > , SimpleUniformSourcePde< DIM >
• ComputeLinearInUCoeffInSourceTermAtNode() : AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM > , CellwiseSourcePde< DIM >
• ComputeLinearSourceTerm() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeMatrixTerm() : AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , BidomainAssembler< ELEMENT_DIM, SPACE_DIM > , BidomainMassMatrixAssembler< DIM > , BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > , CellBasedPdeSolver< DIM > , ExtendedBidomainAssembler< ELEMENT_DIM, SPACE_DIM > , ExtendedBidomainMassMatrixAssembler< DIM > , LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , MassMatrixAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainStiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM > , SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM > , SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM > , SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM > , StiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
• ComputeMeshPartitioning() : DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ComputeNonlinearSourceTerm() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNonlinearSourceTermPrime() : AbstractNonlinearEllipticPde< SPACE_DIM >
• ComputeNorm() : BackwardEulerIvpOdeSolver
• ComputeNumericalJacobian() : BackwardEulerIvpOdeSolver
• ComputeOneStepExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractBackwardEulerCardiacCell< 0u > , AbstractGeneralizedRushLarsenCardiacCell , AbstractRushLarsenCardiacCell
• ComputePressurePressureMatrixTerm() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX > , StokesFlowPreconditionerAssembler< DIM >
• ComputePressureVectorTerm() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
• ComputePseudoEcgAtOneTimeStep() : PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeResidual() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractNonlinearElasticitySolver< DIM > , BackwardEulerIvpOdeSolver
• ComputeResidualAndGetNorm() : AbstractNonlinearElasticitySolver< DIM >
• ComputeSourceTerm() : AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM > , AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeSourceTermAtNode() : AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM > , AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeSpatialPressureMatrixTerm() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX > , StokesFlowAssembler< DIM >
• ComputeSpatialSpatialMatrixTerm() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX > , StokesFlowAssembler< DIM >
• ComputeSpatialVectorTerm() : AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX > , StokesFlowAssembler< DIM >
• ComputeStressAndStressDerivative() : AbstractIsotropicCompressibleMaterialLaw< DIM > , AbstractIsotropicIncompressibleMaterialLaw< DIM > , AbstractMaterialLaw< DIM > , CompressibleExponentialLaw< DIM > , PoleZeroMaterialLaw< DIM > , SchmidCostaExponentialLaw2d
• ComputeTimeStep() : AbstractTimeAdaptivityController
• ComputeTransformedBasisFunctionDerivatives() : AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , LinearBasisFunction< ELEMENT_DIM > , QuadraticBasisFunction< ELEMENT_DIM >
• ComputeTransformedDeformationTensor() : AbstractMaterialLaw< DIM >
• ComputeVectorSurfaceTerm() : AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM > , ExtendedBidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM > , NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ComputeVectorTerm() : AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL > , BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM > , CellBasedPdeSolver< DIM > , LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , MonodomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM > , SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM > , SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM > , SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
• Configure() : CombinedOdeSystem
• ConstantActiveTension() : ConstantActiveTension
• ConstBoundaryCondition() : ConstBoundaryCondition< SPACE_DIM >
• Construct() : CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
• ConstructBoundaryConditionsContainer() : CellBasedPdeHandler< DIM > , CellBasedPdeHandlerOnCuboid< DIM >
• ConstructCuboid() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , QuadraticMesh< DIM >
• ConstructElementAttributes() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• ConstructFromLinearMeshReader() : QuadraticMesh< DIM >
• ConstructFromMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructFromMeshReader() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedQuadraticMesh< DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM > , NodesOnlyMesh< SPACE_DIM > , PottsMesh< DIM > , QuadraticMesh< DIM > , TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , Toroidal2dVertexMesh , VertexMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructLinearMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , QuadraticMesh< DIM >
• ConstructNodeAttributes() : Node< SPACE_DIM >
• ConstructNodesWithoutMesh() : NodesOnlyMesh< SPACE_DIM >
• ConstructRectangularMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > , QuadraticMesh< DIM >
• ConstructRegularSlabMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructRegularSlabMeshWithDimensionSplit() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructStructureTensors() : PapillaryFibreCalculator
• ContactInhibitionCellCycleModel() : ContactInhibitionCellCycleModel
• ContainingBoundaryElementIterator() : Node< SPACE_DIM >::ContainingBoundaryElementIterator
• ContainingBoundaryElementsBegin() : Node< SPACE_DIM >
• ContainingBoundaryElementsEnd() : Node< SPACE_DIM >
• ContainingElementIterator() : Node< SPACE_DIM >::ContainingElementIterator
• ContainingElementsBegin() : Node< SPACE_DIM >
• ContainingElementsEnd() : Node< SPACE_DIM >
• ContinuumMechanicsNeumannBcsAssembler() : ContinuumMechanicsNeumannBcsAssembler< DIM >
• ContinuumMechanicsProblemDefinition() : ContinuumMechanicsProblemDefinition< DIM >
• Converge() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , AbstractUntemplatedConvergenceTester
• Convert() : CellMLToSharedLibraryConverter , FibreConverter
• ConvertCellmlToSo() : CellMLToSharedLibraryConverter
• ConvertOutput() : CmguiDeformedSolutionsWriter< DIM >
• ConvertToHdf5FriendlyString() : PostProcessingWriter< ELEMENT_DIM, SPACE_DIM >
• ConvertWallTimeToMilliseconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ConvertWallTimeToSeconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CopyFileTo() : OutputFileHandler
• CopySchema() : HeartConfig
• CopyTo() : FileFinder
• CorrectNonPeriodicMesh() : Cylindrical2dMesh
• CorriasBuistICCModified() : CorriasBuistICCModified
• CorriasBuistSMCModified() : CorriasBuistSMCModified
• CountVertices() : QuadraticMesh< DIM >
• Create() : CreateElectricsProblem< DIM, PROBLEM_DIM > , CreateElectricsProblem< DIM, 1u > , CreateElectricsProblem< DIM, 2u > , DynamicCellModelLoader
• CreateAndRun() : CardiacSimulation
• CreateAndSetVec() : PetscTools
• CreateCardiacCellForNode() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
• CreateCardiacCellForTissueNode() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > , BathCellFactory< DIM, CELLTYPE > , HeartConfigRelatedCellFactory< SPACE_DIM > , LuoRudySpiralWaveCellFactory , PlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM > , RampedQuarterStimulusCellFactory< CELL, DIM > , ZeroStimulusCellFactory< CELL, DIM >
• CreateCardiacTissue() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM > , ExtendedBidomainProblem< DIM > , MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
• CreateCell() : DynamicCellModelLoader
• CreateCellCycleModel() : AbstractCellCycleModel , Alarcon2004OxygenBasedCellCycleModel , ContactInhibitionCellCycleModel , ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel , FixedDurationGenerationBasedCellCycleModel , GammaDistributedStochasticDurationCellCycleModel , SimpleOxygenBasedCellCycleModel , SimpleWntCellCycleModel , SingleOdeWntCellCycleModel , StochasticDurationCellCycleModel , StochasticDurationGenerationBasedCellCycleModel , StochasticOxygenBasedCellCycleModel , StochasticWntCellCycleModel , TysonNovakCellCycleModel , VanLeeuwen2009WntSwatCellCycleModelHypothesisOne , VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo , WntCellCycleModel
• CreateCellPair() : AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CreateCellWithIntracellularStimulus() : HeartConfigRelatedCellFactory< SPACE_DIM >
• CreateCmguiOutput() : AbstractNonlinearElasticitySolver< DIM >
• CreateContractionCellForElement() : AbstractContractionCellFactory< DIM > , LabelBasedContractionCellFactory< DIM >
• CreateDistributedVector() : DistributedVectorFactory
• CreateElementTessellation() : PottsBasedCellPopulation< DIM >
• CreateExtracellularConductivityTensors() : BidomainTissue< SPACE_DIM > , ExtendedBidomainTissue< SPACE_DIM >
• CreateFilesWithHeaders() : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM > , CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM > , MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
• CreateFixedDimensionFile() : ColumnDataWriter
• CreateGGapConductivities() : ExtendedBidomainTissue< SPACE_DIM >
• CreateHaloNodes() : Cylindrical2dMesh
• CreateInfoFile() : ColumnDataWriter
• CreateInitialCondition() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM > , ExtendedBidomainProblem< DIM >
• CreateIntracellularConductivityTensor() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• CreateIntracellularConductivityTensorSecondCell() : ExtendedBidomainTissue< SPACE_DIM >
• CreateJunction() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
• CreateJunctionFromFile() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
• CreateMeshFromHeartConfig() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CreateMirrorNodes() : Cylindrical2dMesh
• CreateMutableMesh() : PottsBasedCellPopulation< DIM >
• CreateNextDir() : OutputDirectoryFifoQueue
• CreateOptionsFile() : CellMLToSharedLibraryConverter
• CreateOrderedPair() : AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CreatePurkinjeCellForNode() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
• CreatePurkinjeCellForTissueNode() : AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
• CreateResumeXmlFile() : CardiacSimulation
• CreateSolver() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM > , ExtendedBidomainProblem< DIM > , MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
• CreateSrnModel() : AbstractOdeSrnModel , AbstractSrnModel , DeltaNotchSrnModel , Goldbeter1991SrnModel , NullSrnModel
• CreateStimulusForNode() : AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM > , ElectrodesStimulusFactory< DIM > , ZeroNetChargeElectrodes< DIM >
• CreateVec() : DistributedVectorFactory , PetscTools
• CreateVoronoiTessellation() : MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
• CreateVtkOutput() : AbstractContinuumMechanicsSolver< DIM >
• CryptProjectionForce() : CryptProjectionForce
• CryptProjectionStatistics() : CryptProjectionStatistics
• CryptSimulation1d() : CryptSimulation1d
• CryptSimulation2d() : CryptSimulation2d
• CryptSimulationBoundaryCondition() : CryptSimulationBoundaryCondition< DIM >
• CryptStatistics() : CryptStatistics
• CvodeAdaptor() : CvodeAdaptor
• CvodeError() : AbstractCvodeSystem , CvodeAdaptor
• Cylindrical2dMesh() : Cylindrical2dMesh
• Cylindrical2dNodesOnlyMesh() : Cylindrical2dNodesOnlyMesh
• Cylindrical2dVertexMesh() : Cylindrical2dVertexMesh
• CylindricalHoneycombMeshGenerator() : CylindricalHoneycombMeshGenerator
• CylindricalHoneycombVertexMeshGenerator() : CylindricalHoneycombVertexMeshGenerator